magnusdv / pedtools
Tools for working with pedigrees in R
☆26Updated this week
Alternatives and similar repositories for pedtools:
Users that are interested in pedtools are comparing it to the libraries listed below
- Effective Computing—Resources for Computational Biologists☆26Updated 5 years ago
- R package to estimate kinship and FST from SNP data☆20Updated 6 months ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Updated 3 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆34Updated last month
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆38Updated 4 months ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- ☆21Updated 7 months ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- ☆43Updated last month
- R package for pedigree inference based on SNP data☆26Updated 10 months ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Updated 5 months ago
- UCSC liftOver (genome build converter) for vcf format☆12Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- ☆21Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆30Updated 2 years ago
- ☆28Updated 9 months ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 4 months ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆15Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆14Updated last year
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- Scalable population structure inference☆18Updated 2 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 8 months ago