jhuapl-bio / mytaxLinks
mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification
☆12Updated 3 months ago
Alternatives and similar repositories for mytax
Users that are interested in mytax are comparing it to the libraries listed below
Sorting:
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆29Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆61Updated last week
- Nextflow workflow template repository☆20Updated last month
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Whole genome focused array SNP typer☆14Updated 7 months ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated 2 years ago
- UPHL's Reference Free Pipeline☆27Updated 3 months ago
- Intra-species bacterial contamination detection☆25Updated 11 months ago
- Set of tools for viral metagenomics.☆14Updated last week
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated last year
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆26Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- Northern Arizona SNP Pipeline☆20Updated last year
- Predict MLST directly from uncorrected long reads☆27Updated 2 months ago
- Assembly of Nanopore Sequencing☆17Updated 3 weeks ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Quickly get coverage statistics given reads and an assembly☆16Updated last year
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 3 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Influenza data pipeline to automate genotyping assignment☆39Updated 3 months ago
- Metagenomic Analysis in Real Time☆29Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated last week
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆65Updated 2 years ago
- Colinear block visualisation tool☆31Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- ☆14Updated 4 years ago
- REcombination BARcode detector.☆16Updated last year
- Plasmid exploration of bacterial genomes☆23Updated 3 years ago