jhuapl-bio / mytaxLinks
mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification
☆11Updated 3 months ago
Alternatives and similar repositories for mytax
Users that are interested in mytax are comparing it to the libraries listed below
Sorting:
- Analysis of Double Barcoded Illumina Amplicon Data☆9Updated 5 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆36Updated 2 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆35Updated 2 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆28Updated last month
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Updated 9 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last month
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- ☆36Updated 3 years ago
- ☆36Updated last month
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆59Updated 2 years ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- SC2 variant detection and composition pipeline☆17Updated last year
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated this week
- Overlap assembler of paired-end DNA sequences generated by Illumina☆22Updated 8 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 4 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Northern Arizona SNP Pipeline☆19Updated 7 months ago
- all methods related to Enterobase☆42Updated 9 months ago
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago