mytax is a tool for building custom taxonomies, useful for nucleotide sequence classification
☆13Oct 9, 2025Updated 5 months ago
Alternatives and similar repositories for mytax
Users that are interested in mytax are comparing it to the libraries listed below
Sorting:
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆62Updated this week
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Nextflow workflow template repository☆20Dec 15, 2025Updated 2 months ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- ☆13May 27, 2025Updated 9 months ago
- ☆16Jun 21, 2023Updated 2 years ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 2 weeks ago
- 🧬 Unique (& conserved) DNA sequence identification☆14Jul 7, 2025Updated 8 months ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 3 years ago
- UI for generating simple chord diagrams for guitar, bass and piano☆13Aug 22, 2025Updated 6 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Sep 27, 2025Updated 5 months ago
- ☆18Dec 11, 2024Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆13Jun 30, 2023Updated 2 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Updated this week
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last week
- ☆12Mar 8, 2024Updated 2 years ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated last month
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- The Database Infrastructure for Mass Spectrometry (DIMSpec) project☆26Jun 27, 2025Updated 8 months ago
- Python neighbor-joining library. Goal: Efficient O(n^2) neighbor-joining algorithm.☆12May 5, 2014Updated 11 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 11 years ago
- a getting-started sample for Clojure and Solr☆11Aug 28, 2015Updated 10 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- OpenSCAD DSL for OCaml☆15Oct 4, 2022Updated 3 years ago
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- Private, browser-based placement of genome sequences on phylogenetic trees using UShER.☆11Nov 22, 2024Updated last year
- ☆10Apr 16, 2025Updated 10 months ago
- Probabilistic single-individual haplotyping☆10Mar 15, 2019Updated 6 years ago
- Fungal Feature Tracker (FFT): A tool to quantitatively characterize morphology and growth of filamentous fungi☆13Jul 29, 2022Updated 3 years ago
- Search engine for subtitles☆10Mar 28, 2015Updated 10 years ago
- Efficient, concise stream data processing.☆12Jul 22, 2015Updated 10 years ago