PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
☆33Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for PENCIL
Users that are interested in PENCIL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17May 12, 2026Updated 2 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 3 years ago
- ☆23Apr 30, 2025Updated last year
- Code for the paper: Mixed Models with Multiple Instance Learning☆22Nov 10, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Official implementation of JAMIE, Joint variational Autoencoders for Multimodal Imputation and Embedding☆16Sep 11, 2025Updated 10 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated last year
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- ☆17Jul 12, 2024Updated 2 years ago
- ☆29Nov 21, 2019Updated 6 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- Geometry-preserving random sampling☆99Oct 29, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Simple simulation of single-cell RNA sequencing data☆235May 20, 2026Updated 2 months ago
- ☆19Dec 1, 2021Updated 4 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- SPecies level IdentificatioN of metaGenOmic amplicons☆11Apr 11, 2018Updated 8 years ago
- ☆14Mar 17, 2022Updated 4 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆15Feb 23, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Jun 16, 2023Updated 3 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- Spatial-Linked Alignment Tool☆94Dec 20, 2024Updated last year
- ☆13Jan 23, 2025Updated last year
- ☆10Mar 11, 2022Updated 4 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- Code of "Bayes-MIL: A New Probabilistic Perspective on Attention-based Multiple Instance Learning for Whole Slide Images" - ICLR 2023☆21Nov 26, 2023Updated 2 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Scissor package☆271May 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated last month
- Methods for inferring undirected networks from data☆47Mar 17, 2021Updated 5 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 7 years ago
- ☆18Nov 5, 2024Updated last year
- A clusterability measure for scRNA-seq data.☆20Feb 2, 2022Updated 4 years ago
- ☆18Aug 1, 2023Updated 2 years ago
- ☆19Dec 15, 2023Updated 2 years ago