Alternatives and similar repositories for singularity-containers:

Users that are interested in singularity-containers are comparing it to the libraries listed below

• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆19Updated this week
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 4 years ago
• WilsonSayresLab / BioinformaticsIntroduction
  ☆28Updated 4 years ago
• cran / chromoMap
   This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data
  ☆9Updated 3 years ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 6 months ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆23Updated last month
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆49Updated last year
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 7 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆37Updated last year
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 10 months ago
• cgat-developers / cgat-apps
  cgat-apps repository
  ☆34Updated last month
• lconde-ucl / DGE
  Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
  ☆12Updated 11 months ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated last week
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• MonashBioinformaticsPlatform / RNAsik-pipe
  RNAsik - more than just a pipeline
  ☆13Updated last year
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 6 months ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated last month
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• seqeralabs / seqerakit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆29Updated 2 weeks ago
• BioContainers / workflows
  Bioinformatics curated workflows that use Biocontainers tools
  ☆19Updated 5 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated last year
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 9 months ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 7 months ago