amkusmec / FarmCPUppLinks
Perform GWAS using the FarmCPU model.
☆23Updated 5 months ago
Alternatives and similar repositories for FarmCPUpp
Users that are interested in FarmCPUpp are comparing it to the libraries listed below
Sorting:
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated 2 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆60Updated last month
- https://filippob.github.io/introduction_to_gwas/☆20Updated 11 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- GWAS software that can handle autopolyploids☆28Updated 7 months ago
- ☆30Updated last month
- ☆16Updated 4 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 2 weeks ago
- Perform GWAS with gemma in a simple pipeline☆26Updated last month
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated last month
- Fitting latent factor mixed models☆13Updated 4 years ago
- ☆10Updated 4 years ago
- R package for pedigree inference based on SNP data☆26Updated 11 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 months ago
- Evolutionary Transcriptomics with R☆43Updated last week
- Generalized linear Mixed Model Association Tests☆42Updated last year
- ☆43Updated 2 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- ☆17Updated last year
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆21Updated this week
- ☆9Updated 7 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆13Updated 2 years ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 7 months ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago