amkusmec / FarmCPUpp
Perform GWAS using the FarmCPU model.
☆23Updated 2 months ago
Alternatives and similar repositories for FarmCPUpp:
Users that are interested in FarmCPUpp are comparing it to the libraries listed below
- https://filippob.github.io/introduction_to_gwas/☆19Updated 7 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 2 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆56Updated 3 months ago
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- ☆43Updated last year
- ☆24Updated 3 years ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆13Updated 2 years ago
- GWAS software that can handle autopolyploids☆28Updated 4 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 2 months ago
- Evolutionary Transcriptomics with R☆42Updated last week
- ☆29Updated last week
- ☆16Updated 4 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- ☆16Updated last year
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆28Updated 3 months ago
- R package for pedigree inference based on SNP data☆26Updated 8 months ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 11 months ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆49Updated last year
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆36Updated last year
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆12Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- ☆11Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆33Updated 9 months ago
- ☆10Updated 4 years ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago