amkusmec / FarmCPUppLinks
Perform GWAS using the FarmCPU model.
☆24Updated 10 months ago
Alternatives and similar repositories for FarmCPUpp
Users that are interested in FarmCPUpp are comparing it to the libraries listed below
Sorting:
- Generalized linear Mixed Model Association Tests☆44Updated last year
- ☆17Updated 5 years ago
- https://filippob.github.io/introduction_to_gwas/☆21Updated 3 months ago
- blupADC:An useful tool for animal and plant breeding☆31Updated 11 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated last month
- Integrative analysis of structural variations.☆40Updated last year
- ☆18Updated last year
- Fitting latent factor mixed models☆13Updated 5 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆46Updated 6 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last month
- ☆26Updated 4 years ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- ☆31Updated last month
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆14Updated 7 months ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 6 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆19Updated 3 years ago
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆27Updated last month
- Two methods for mapping and visualizing associated data on phylogeny using ggtree☆12Updated 6 years ago
- Tao Yan's Plot Toolkit☆12Updated 6 years ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆14Updated 3 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆54Updated last month
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 5 months ago
- ☆30Updated 4 years ago
- ☆44Updated 7 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 6 months ago
- GWAS software that can handle autopolyploids☆30Updated 2 weeks ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Handy genetics-related R scripts☆32Updated 5 years ago