colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures
☆125Feb 27, 2026Updated last week
Alternatives and similar repositories for ggpubfigs
Users that are interested in ggpubfigs are comparing it to the libraries listed below
Sorting:
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- ☆11Feb 12, 2026Updated 3 weeks ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Slides and materials for the "Quarto for Reproducible Medical Manuscripts" webinar for R/Medicine☆15Mar 25, 2024Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Jul 14, 2024Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Oct 27, 2023Updated 2 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- a Quarto extension to add Mastodon powered comments to blogs and articles☆14Feb 3, 2026Updated last month
- Recovering genes from targeted sequence capture data☆133Jan 9, 2026Updated 2 months ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆37Jul 11, 2025Updated 7 months ago
- ☆26Jan 26, 2026Updated last month
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆82Mar 3, 2026Updated last week
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Nov 9, 2024Updated last year
- Easily Arrange Images with Patchwork Alongside ggplot2 Figures.☆80May 2, 2025Updated 10 months ago
- ☆26Feb 24, 2026Updated 2 weeks ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 5 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 2 years ago
- ☆17May 13, 2025Updated 9 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated 5 months ago