Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX
☆20Oct 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for jaxqtl
Users that are interested in jaxqtl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software to infer latent pleiotropic components from GWAS summary data☆18Jan 30, 2025Updated last year
- Stochastic trace estimation using JAX☆22Aug 27, 2026Updated 2 months ago
- PM520 Advanced Statistical Computing☆16Apr 3, 2026Updated 6 months ago
- 🧹 Remove technical noise from single-cell RNA sequencing count data with expectation-maximization☆30Oct 9, 2026Updated 3 weeks ago
- ☆48Aug 17, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 8 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆43Apr 26, 2024Updated 2 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆34Aug 7, 2026Updated 2 months ago
- Autonomous multi-agent framework to optimize scientific software☆57Sep 13, 2026Updated last month
- ☆26Oct 12, 2026Updated 2 weeks ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Pipeline to run scE2G☆68Updated this week
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- ☆31Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A command-line tool to capture hierarchical relationships at scale☆20Updated this week
- team lander github repo☆10Aug 7, 2021Updated 5 years ago
- ☆20Aug 25, 2026Updated 2 months ago
- ☆26Aug 18, 2026Updated 2 months ago
- Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.☆24Apr 16, 2018Updated 8 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated 2 years ago
- Repository for meK-Means Inference Method☆10Aug 7, 2024Updated 2 years ago
- Collection of analysis tools for quantitative trait loci☆66Sep 20, 2026Updated last month
- ☆14Apr 20, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 💥 k-mer based variant calling and genotyping — sensitive, fast, and easy to use☆22Oct 12, 2026Updated 2 weeks ago
- ☆22Jun 12, 2026Updated 4 months ago
- ☆22Feb 26, 2026Updated 8 months ago
- Ultrafast and powerful eGene identification method☆10Jul 17, 2025Updated last year
- PhiSpace for continuous phenotyping single-cell and spatial transcriptomics data☆18Oct 12, 2026Updated 2 weeks ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆32Jun 18, 2023Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆14Oct 24, 2019Updated 7 years ago
- ☆16Updated this week
- Fast and scalable inference for single-cell differential gene expression of multiple patients☆15Jul 3, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- cell type specific, trait-associated gene regulation☆31Sep 8, 2026Updated last month
- R boot camp: Scientific Computing☆30Aug 21, 2025Updated last year
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆18Oct 4, 2026Updated 3 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 10 months ago
- LARIS maps ligand-receptor signalling in spatial transcriptomics within and across tissue states☆18Oct 13, 2026Updated 2 weeks ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆17Mar 3, 2026Updated 7 months ago