☆31Jun 24, 2025Updated last year
Alternatives and similar repositories for TCRMatch
Users that are interested in TCRMatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Aug 18, 2020Updated 6 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Aug 19, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 6 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated 2 months ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 26, 2020Updated 6 years ago
- ☆12Jun 28, 2024Updated 2 years ago
- ☆26Aug 1, 2026Updated 3 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆80Apr 1, 2023Updated 3 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- TCR and BCR assembly from RNA-seq data☆362Updated this week
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 8 months ago
- Git-based antigen specificity database storage & management.☆155Updated this week
- Python library for immune repertoire analysis☆17Aug 6, 2026Updated 3 weeks ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- [𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆49Mar 5, 2026Updated 5 months ago
- A highly interactive single-cell bioinformatics workflow management library. Built with dataforest☆10Oct 4, 2022Updated 3 years ago
- ☆17Jun 24, 2021Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- an R package collection for topological data analysis☆17Apr 16, 2026Updated 4 months ago
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆16Jun 30, 2023Updated 3 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆162Aug 20, 2024Updated 2 years ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆176Dec 24, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 2, 2026Updated 2 months ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- Cell type prioritization in single-cell data☆149Mar 26, 2026Updated 5 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Updated this week