☆31Jun 24, 2025Updated 10 months ago
Alternatives and similar repositories for TCRMatch
Users that are interested in TCRMatch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Aug 18, 2020Updated 5 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆35Apr 1, 2022Updated 4 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated last year
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Clonotype Neighbor Graph Analysis☆96Feb 12, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125Apr 14, 2026Updated 2 weeks ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Mar 29, 2022Updated 4 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated 2 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆18Apr 22, 2024Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆92Apr 12, 2024Updated 2 years ago
- Differential spatial enrichment across conditions☆27Oct 1, 2025Updated 6 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆77Apr 1, 2023Updated 3 years ago
- ☆12Jun 28, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆346Apr 23, 2026Updated last week
- Gene orthologs for model organisms in a tidy data format☆15Sep 29, 2022Updated 3 years ago
- Python library for immune repertoire analysis☆17Feb 27, 2026Updated 2 months ago
- Convert TCR gene names☆15Dec 26, 2025Updated 4 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆16Jun 30, 2023Updated 2 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 9 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆173Dec 24, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Decombinator: fast, error-correcting analysis of TCR repertoires☆27Mar 20, 2026Updated last month
- Amino Acid Embedding Representation as Machine Learning Features☆21Aug 3, 2018Updated 7 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆158Aug 20, 2024Updated last year
- A highly interactive single-cell bioinformatics workflow management library. Built with dataforest☆10Oct 4, 2022Updated 3 years ago
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆32Oct 5, 2025Updated 6 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆74Apr 22, 2026Updated last week
- Cell type prioritization in single-cell data☆140Mar 26, 2026Updated last month
- ☆24Apr 7, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- ☆55Nov 28, 2025Updated 5 months ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- 🐶 hlabud: HLA genotype analysis in R☆18Apr 11, 2025Updated last year
- Find lines across files by regex and edit them all at once with your $EDITOR☆70Apr 17, 2026Updated last week
- ☆17Oct 3, 2022Updated 3 years ago
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Updated this week