TheAustinator / cellforest
A highly interactive single-cell bioinformatics workflow management library. Built with dataforest
☆10Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for cellforest
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 3 years ago
- R package to access DoRothEA's regulons☆133Updated 8 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆119Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- ☆88Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆108Updated this week
- What you need to process the Quarterly DepMap-Omics releases from Terra☆110Updated 2 weeks ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆208Updated 6 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆79Updated 3 years ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆134Updated last week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆91Updated 2 months ago
- Clonotype Neighbor Graph Analysis☆81Updated 2 months ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆132Updated 3 weeks ago
- T/B cell receptor sequencing analysis notes☆212Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆100Updated last year
- Benchmarking computational single cell ATAC-seq methods☆177Updated 3 years ago
- Tabula Muris Senis☆96Updated last year
- Python package to perform enrichment analysis from omics data.☆161Updated 2 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆94Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆184Updated 7 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆187Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆134Updated 4 months ago
- flexible CDR based distance metrics☆55Updated 2 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- Scanpy use cases.☆77Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆250Updated last month
- Cell types enrichment analysis☆182Updated 5 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆108Updated this week
- R package for the analysis of single-cell immune repertoires☆41Updated 3 weeks ago