TheAustinator / cellforestLinks
A highly interactive single-cell bioinformatics workflow management library. Built with dataforest
☆10Updated 3 years ago
Alternatives and similar repositories for cellforest
Users that are interested in cellforest are comparing it to the libraries listed below
Sorting:
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆157Updated last week
- 🗂️ [vdjdb.com is up and running!] Git-based TCR database storage & management. Submissions welcome!☆150Updated this week
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Updated this week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆236Updated last month
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Updated 5 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆86Updated 4 years ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆219Updated 5 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Updated 4 months ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆139Updated 3 years ago
- Prize-Collecting Steiner Forests for Interactomes☆63Updated last year
- Reference mapping for single-cell genomics☆398Updated 2 months ago
- ☆23Updated 9 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 4 months ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 5 years ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆165Updated 11 months ago
- T/B cell receptor sequencing analysis notes☆273Updated last year
- R package to access DoRothEA's regulons☆154Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Updated 3 years ago
- Python package to perform enrichment analysis from omics data.☆253Updated last week
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆133Updated last year
- Mapping DEGs to PPI Networks, Identifying Network Hubs and Highly Connected Proteins, and Simulating Genetic Circuits. An End-to-End DIY …☆26Updated last year
- Imputing proteomics data using deep learning models☆31Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆149Updated 3 years ago
- Report processing and protein quantification for MS-based proteomics☆52Updated 2 years ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆82Updated 4 years ago
- Tabula Muris Senis☆108Updated 2 years ago
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- repository containing analysis scripts and auxiliary files☆37Updated 5 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆337Updated 2 months ago