ERGO is a deep learing based model for predicting TCR-peptide binding.
☆18Aug 26, 2020Updated 6 years ago
Alternatives and similar repositories for ERGO
Users that are interested in ERGO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- ☆41Aug 18, 2020Updated 6 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆93Jun 14, 2022Updated 4 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 8 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- My notes about tech (Linux/R/Julia/Python/Cpp/etc.)☆12Jul 15, 2025Updated last year
- ☆31Jun 24, 2025Updated last year
- The tRNA adaptation index☆22Apr 25, 2025Updated last year
- ☆17Jun 24, 2021Updated 5 years ago
- Overview of the machine learning project and various sub-tasks.☆10Updated this week
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆123Sep 16, 2025Updated 11 months ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- ☆14Oct 14, 2022Updated 3 years ago
- ☆54Dec 3, 2023Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆70Nov 18, 2025Updated 9 months ago
- ☆12Mar 22, 2024Updated 2 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- TEIM: TCR-Epitope Interaction Modeling☆60Jul 26, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated last year
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 11 months ago
- epiTCR: a highly sensitive predictor for TCR–peptide binding☆16Aug 15, 2025Updated last year
- Repo for advertising and organizing VICC, CGC, CIViC, & ClinGen Somatic: Variant Curation & Coding Unconference/meeting activities☆10Jun 2, 2026Updated 3 months ago
- ☆12Jun 28, 2024Updated 2 years ago
- Free and Open Platform for AI-assisted Computing☆10May 19, 2019Updated 7 years ago
- DNA as an information storage medium using either 4-base codon or binary representations of 256-ASCII☆11Sep 6, 2013Updated 13 years ago
- ☆16Apr 26, 2022Updated 4 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.☆15Aug 4, 2023Updated 3 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆18Jun 28, 2025Updated last year
- ☆17Sep 16, 2024Updated last year
- alphafold FAPE loss☆10Sep 28, 2021Updated 4 years ago
- Biological sequence visualization functions in R☆13May 28, 2026Updated 3 months ago