louzounlab / ERGOLinks
ERGO is a deep learing based model for predicting TCR-peptide binding.
☆18Updated 5 years ago
Alternatives and similar repositories for ERGO
Users that are interested in ERGO are comparing it to the libraries listed below
Sorting:
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆33Updated 3 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆81Updated last year
- ☆17Updated 4 years ago
- A visualization software for antibody multi sequence alignment☆20Updated last year
- A Deep Learning based Efficacy Prediction System for drug discovery☆70Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆19Updated 2 weeks ago
- ☆50Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆56Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 4 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- ☆90Updated 10 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆77Updated last year
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆22Updated last year
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆16Updated last year
- HLA-I ligand predictor☆42Updated 8 months ago
- ☆57Updated last year
- ☆20Updated 2 years ago
- ☆47Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆120Updated 2 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last month
- ☆37Updated 2 years ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆113Updated last year
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆215Updated 3 months ago
- Bioinformatics code for paper associated with deep diversification of AAV☆40Updated 9 months ago