mikejhuang / PhageProtVecLinks
Amino Acid Embedding Representation as Machine Learning Features
☆19Updated 7 years ago
Alternatives and similar repositories for PhageProtVec
Users that are interested in PhageProtVec are comparing it to the libraries listed below
Sorting:
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆52Updated 3 weeks ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆40Updated 2 years ago
- The repository contains all the code for the paper amino acid encoding using deep learning application☆21Updated last year
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- deep protein solubility prediction☆39Updated 6 years ago
- ☆25Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆62Updated 5 months ago
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆12Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 8 months ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆30Updated 2 years ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆29Updated last month
- A Python package for extracting protein sequence features☆59Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆34Updated 2 years ago
- DeepContact Software☆26Updated 7 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- ☆36Updated 7 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆27Updated 6 months ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆27Updated last year
- ☆36Updated last year
- Neural networks for deep mutational scanning data☆69Updated 2 months ago