Alternatives and similar repositories for biomaRt

Users that are interested in biomaRt are comparing it to the libraries listed below

• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 4 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆69Updated this week
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆91Updated 7 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆115Updated 3 months ago
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆34Updated 3 months ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 6 months ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆57Updated 9 months ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆84Updated last week
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆119Updated 7 years ago
• neurogenomics / orthogene
  🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…
  ☆46Updated last month
• andymckenzie / DGCA
  Differential Gene Correlation Analysis
  ☆47Updated last year
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆69Updated 8 months ago
• ben-laufer / DMRichR
  A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…
  ☆46Updated 2 years ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆49Updated 2 years ago
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆55Updated 2 years ago
• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated last month
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆65Updated last year
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 7 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆67Updated 2 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆118Updated last year
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated 2 weeks ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• alserglab / phantasus
  Visual exploratory analysis of gene expression data
  ☆43Updated last month
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 8 months ago
• hbctraining / main
  ☆56Updated last week