Huber-group-EMBL / biomaRtView external linksLinks
R package providing query functionality to BioMart instances like Ensembl
☆45Updated this week
Alternatives and similar repositories for biomaRt
Users that are interested in biomaRt are comparing it to the libraries listed below
Sorting:
- Code to generate Figure 2 of the paper "Predicting age from the transcriptome of human dermal fibroblasts" from the FPKM tables☆24Jul 9, 2021Updated 4 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆12Updated this week
- ☆21Sep 20, 2022Updated 3 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 4, 2024Updated 2 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- ☆12Nov 19, 2023Updated 2 years ago
- This fork of Illumina/ExpansionHunter introduces new features and optimizations☆14Feb 1, 2026Updated 2 weeks ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 5 months ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 7 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated last month
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆22Oct 3, 2024Updated last year
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Se…☆19Feb 10, 2026Updated last week
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- ☆12Sep 24, 2020Updated 5 years ago
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆22May 8, 2024Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆17Jan 8, 2026Updated last month
- An interface for Nested Stochastic Block Model for single cell analysis☆36Sep 30, 2025Updated 4 months ago
- This is the ensembldb development repository.☆36Aug 18, 2025Updated 5 months ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- ☆17Oct 3, 2022Updated 3 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- ☆17Mar 11, 2023Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆40Nov 18, 2025Updated 2 months ago
- ☆17Sep 1, 2023Updated 2 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 7 years ago
- ☆37Feb 9, 2026Updated last week
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆119Jan 20, 2026Updated 3 weeks ago
- A common data format and inference environment for single-cell trajectories 📦☆19Nov 26, 2025Updated 2 months ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 4 months ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Jun 15, 2025Updated 8 months ago
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 6 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Feb 9, 2024Updated 2 years ago
- An R package for visualising cell-cell interactions☆46Aug 14, 2024Updated last year
- Genomic Data Retrieval with R☆223Dec 2, 2025Updated 2 months ago
- CRAN Package For Managing Bioconductor Packages☆75Nov 13, 2025Updated 3 months ago