R package providing query functionality to BioMart instances like Ensembl
☆49Apr 7, 2026Updated last month
Alternatives and similar repositories for biomaRt
Users that are interested in biomaRt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This fork of Illumina/ExpansionHunter introduces new features and optimizations☆17May 14, 2026Updated last week
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- iCount, protein-RNA interaction analytics☆23Dec 14, 2021Updated 4 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- Code to generate Figure 2 of the paper "Predicting age from the transcriptome of human dermal fibroblasts" from the FPKM tables☆24Jul 9, 2021Updated 4 years ago
- Website Deployment for CRC User Manual☆13May 5, 2026Updated 2 weeks ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 6 months ago
- EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery☆23Oct 3, 2024Updated last year
- ☆12Nov 19, 2023Updated 2 years ago
- One hour lecture to introduce LaTeX to maths undergraduates.☆10Oct 2, 2020Updated 5 years ago
- ☆12Apr 17, 2024Updated 2 years ago
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 2 months ago
- ☆23Sep 20, 2022Updated 3 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆125Updated this week
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- Implements the algorithm form "Sparse logistic principal components analysis for binary data"☆14Dec 11, 2013Updated 12 years ago
- ☆31Sep 15, 2025Updated 8 months ago
- Proteomics Toolset for Integrative Data Analysis☆26Oct 7, 2025Updated 7 months ago
- ☆17Mar 11, 2023Updated 3 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- In-house computational biology workflows at Columbia Neurology☆36Sep 7, 2025Updated 8 months ago
- ☆16Updated this week
- Regularization Paths for Huber Loss Regression and Quantile Regression Penalized by Lasso or Elastic-Net☆10Nov 9, 2024Updated last year
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated last month
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Apr 23, 2026Updated last month
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- DYNamics Agnostic Network MOdels☆18Jul 3, 2018Updated 7 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆16Apr 24, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Apr 23, 2024Updated 2 years ago
- R Package. Bayesian and nonparametric quantile regression, using Gaussian Processes to model the trend, and Dirichlet Processes, for the …☆11Nov 22, 2019Updated 6 years ago
- A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.☆22May 8, 2024Updated 2 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆15Mar 3, 2026Updated 2 months ago
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- ☆12Sep 24, 2020Updated 5 years ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Apr 5, 2023Updated 3 years ago