A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.
☆23May 8, 2024Updated 2 years ago
Alternatives and similar repositories for knn_sleepwalk
Users that are interested in knn_sleepwalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Mar 2, 2026Updated 7 months ago
- ImageJ macro for microglia morphology analysis☆20Jun 10, 2026Updated 4 months ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆15Oct 27, 2023Updated 2 years ago
- Exploring dimension-reduced embeddings☆111Sep 8, 2026Updated last month
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- LabIcons is a collection of professional illustrations of CPM laboratory equipment for use in papers and presentations.☆24Aug 3, 2026Updated 2 months ago
- Introduction to Computational Biology☆34Oct 8, 2026Updated last week
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆25Sep 23, 2026Updated 3 weeks ago
- ☆19Jun 15, 2023Updated 3 years ago
- A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.☆20Mar 11, 2026Updated 7 months ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Finding gene expression states in scRNA-seq data☆58Mar 22, 2024Updated 2 years ago
- ☆29Sep 4, 2023Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated last year
- Alignability testing and integration of single-cell data☆24Feb 29, 2024Updated 2 years ago
- ☆18Nov 5, 2024Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆21Oct 10, 2024Updated 2 years ago
- ☆13May 11, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A deep model infers gene regulation networks from scRNA-seq data.☆13Sep 3, 2026Updated last month
- Pipeline for harmonising immunological receptor–epitope interactions☆17Sep 28, 2026Updated 2 weeks ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Feb 28, 2022Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Python package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆15Dec 11, 2023Updated 2 years ago
- ☆13Mar 5, 2024Updated 2 years ago
- Phylogenetic analyses code☆10Feb 12, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Repository that contains all the data, code and manuscript files for a paper that explores the use of GAMs in biomedical research.☆22Jun 3, 2024Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 11 months ago
- Vector representations of gene co-expression in single cell RNAseq.☆37Jun 7, 2026Updated 4 months ago
- Manim code for my videos in 2020☆10May 6, 2020Updated 6 years ago
- Exploring retrieval systems for language models☆14Aug 7, 2026Updated 2 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year