Alternatives and similar repositories for EmbedGEM:

Users that are interested in EmbedGEM are comparing it to the libraries listed below

• MASILab / pyPheWAS
  MASI Lab Implementation of PheWAS in Python
  ☆28Updated 5 months ago
• gerstung-lab / Delphi
  Modelling human health trajectories using generative transformers
  ☆25Updated this week
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• snap-stanford / planet
  PlaNet: Predicting population response to drugs via clinical knowledge graph
  ☆29Updated last month
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated last year
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆77Updated 2 weeks ago
• mims-harvard / SHEPHERD
  SHEPHERD: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases
  ☆53Updated 8 months ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• InfectionMedicineProteomics / BINN
  Generating biologically informed neural networks
  ☆47Updated 3 months ago
• cantinilab / momix-notebook
  ☆65Updated last year
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 3 years ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆45Updated 2 years ago
• insitro / AllelicSeries
  Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…
  ☆13Updated last month
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆48Updated 10 months ago
• suinleelab / contrastiveVI
  ☆54Updated last year
• sunericd / TISSUE
  TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty …
  ☆30Updated last year
• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆21Updated 3 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 7 months ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆107Updated 7 months ago
• KrishnaswamyLab / SAUCIE
  ☆99Updated 7 months ago
• Genentech / sVAE
  ☆61Updated last year
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆50Updated last month
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆69Updated 2 years ago
• isb-cgc / Community-Notebooks
  ☆13Updated 2 months ago
• EHDEN / ETL-UK-Biobank
  ETL UK-Biobank
  ☆13Updated 2 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆26Updated last month
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆51Updated 2 years ago