A common data format and inference environment for single-cell trajectories 📦
☆19Nov 26, 2025Updated 3 months ago
Alternatives and similar repositories for dynwrap
Users that are interested in dynwrap are comparing it to the libraries listed below
Sorting:
- ☆12Mar 2, 2020Updated 5 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 3 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆15Jul 4, 2024Updated last year
- A tool for single-cell data analysis.☆41Sep 24, 2025Updated 5 months ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- CRAN R Package: Ridge Regression with automatic selection of the penalty parameter☆18May 2, 2023Updated 2 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 3 years ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- scover☆24Nov 3, 2023Updated 2 years ago
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 6 months ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Dec 3, 2024Updated last year
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Apr 19, 2020Updated 5 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆10Nov 20, 2025Updated 3 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated 10 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- ☆73Jan 13, 2022Updated 4 years ago
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆133Dec 21, 2023Updated 2 years ago
- ☆36Apr 16, 2025Updated 10 months ago
- ☆11Mar 31, 2023Updated 2 years ago
- Assembly - a hugo theme☆10Oct 2, 2018Updated 7 years ago
- AI for a cure, a combination of Latent-GAN and VAE-JTNN to create 100% valid drug like molecules☆10Mar 16, 2020Updated 5 years ago
- R package to analyze single cell DNA sequencing data.☆10Jan 28, 2026Updated last month
- Developing a Deep learning classification-based model for screening pharmaceutical compounds with hERG inhibitory activity (cardiotoxicit…☆14Oct 2, 2024Updated last year
- mesa package for Methylation Enrichment Sequencing Analysis☆15Nov 20, 2025Updated 3 months ago
- gmx_corr converts the covariance matrix which is produced by GROMACS covar to cross correlation matrix and creates a heat map figure.☆11Oct 11, 2022Updated 3 years ago