Helper Functions for Interactive Tree Of Life (iTOL)
☆185Nov 2, 2025Updated 9 months ago
Alternatives and similar repositories for itol.toolkit
Users that are interested in itol.toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance modification detection tool in Rust☆62Feb 8, 2026Updated 6 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆109May 15, 2020Updated 6 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- ☆13Jun 1, 2021Updated 5 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆113May 23, 2026Updated 2 months ago
- EasyStat☆21Jun 11, 2026Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆666Aug 7, 2026Updated last week
- ☆37Nov 11, 2022Updated 3 years ago
- This is an R package for element cycle analysis using metagenomic data.☆48Feb 2, 2026Updated 6 months ago
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆18Nov 23, 2023Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆224Aug 10, 2026Updated last week
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- An R package for downstream data analysis of microbiome omics data☆290Jul 28, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- ☆16May 1, 2025Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated last month
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆95Oct 1, 2025Updated 10 months ago
- ☆22Jan 14, 2024Updated 2 years ago
- ☆23Dec 11, 2024Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆55May 16, 2026Updated 3 months ago
- circlize examples☆11Jun 23, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆75Mar 16, 2025Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- ☆38Nov 5, 2025Updated 9 months ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- EGDB: A Comprehensive Multi-Omics Database for Energy Grasses and the Epigenomic Atlas of Pearl Millet☆42Jan 30, 2025Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- A user-friendly workflow for phylogenomics☆232Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated 3 months ago
- R package for microbiome biomarker discovery☆201Feb 19, 2025Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆109Jan 22, 2026Updated 6 months ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆53Aug 16, 2021Updated 5 years ago
- ☆11Jan 31, 2018Updated 8 years ago
- Everything is Linkable☆226Oct 22, 2025Updated 9 months ago