Helper Functions for Interactive Tree Of Life (iTOL)
☆186Nov 2, 2025Updated last year
Alternatives and similar repositories for itol.toolkit
Users that are interested in itol.toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance modification detection tool in Rust☆64Feb 8, 2026Updated 8 months ago
- Generating iToL annotations from Spreadsheet or CSV files☆108May 15, 2020Updated 6 years ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- ☆12Aug 6, 2026Updated 3 months ago
- ☆38Nov 11, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆20Apr 8, 2022Updated 4 years ago
- ☆19Jun 25, 2025Updated last year
- Estimating maximum growth rates of bacteria from genomic data with Phydon.☆10Sep 18, 2025Updated last year
- An R package for downstream data analysis of microbiome omics data☆295Oct 20, 2026Updated 2 weeks ago
- ☆23Dec 11, 2024Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆99Sep 24, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆694Oct 11, 2026Updated 3 weeks ago
- ☆13Jun 1, 2021Updated 5 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- A user-friendly workflow for phylogenomics☆235Sep 28, 2026Updated last month
- Phylogenetic tools for Eco-phylogenetics☆16Oct 10, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Updated this week
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆79Aug 28, 2026Updated 2 months ago
- Professional Comprehensive Omics Data Analysis☆32Apr 3, 2026Updated 7 months ago
- Graph-based Sequence Assembly Toolkit☆24Sep 11, 2026Updated last month
- EasyStat☆21Sep 24, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆20May 17, 2023Updated 3 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆11Mar 10, 2026Updated 7 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 28, 2026Updated last week
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated last month
- Extended tools for correlation analysis and visualization.☆46Mar 19, 2020Updated 6 years ago
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 8 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- ☆17May 1, 2025Updated last year
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆344Oct 29, 2026Updated last week
- iMeta teaches you to plot☆57Apr 26, 2023Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month