Alternatives and similar repositories for itol.toolkit

Users that are interested in itol.toolkit are comparing it to the libraries listed below

• taowenmicro / ggClusterNet
  Microbial ecological network visualization clustering
  ☆138Updated last month
• YongxinLiu / EasyMicrobiome
  ☆140Updated last week
• cafferychen777 / ggpicrust2
  Make Picrust2 Output Analysis and Visualization Easier
  ☆172Updated this week
• emblab-westlake / MbioAssy
  ☆16Updated 6 months ago
• taowenmicro / phyloseq_translate
  phyloseq R
  ☆12Updated 6 years ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆107Updated 5 years ago
• YongxinLiu / Metagenome
  Metagenome analysis pipeline
  ☆100Updated 4 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆91Updated 2 months ago
• SegataLab / lefse
  ☆86Updated last year
• microbiota / amplicon
  Statistics and visualization for amplicon data
  ☆72Updated 2 years ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• cozygene / FEAST
  Fast expectation maximization for microbial source tracking
  ☆136Updated last year
• YongxinLiu / Note
  ☆125Updated 4 years ago
• Weidong-Chen-Microbial-Ecology / Stochastic-assembly-of-river-microeukaryotes
  ☆14Updated 6 years ago
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆124Updated last year
• EMBL-PKU / BASALT
  Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…
  ☆124Updated last week
• Mengting-Maggie-Yuan / warming-network-complexity-stability
  Computer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
  ☆50Updated 4 years ago
• YongxinLiu / Amplicon2017
  Data and scripts for amplicon pipeline
  ☆26Updated 6 years ago
• taowenmicro / EasyStat
  EasyStat
  ☆19Updated 4 months ago
• YongxinLiu / Zhang2018SCLS
  Rice (Oryza Sative) root microbiome time-course analysis. (Zhang2018SCLS)
  ☆31Updated 6 years ago
• YuLab-SMU / MicrobiotaProcess
  A comprehensive R package for deep mining microbiome
  ☆190Updated last month
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆130Updated 2 months ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆17Updated last year
• BioEasy / EasyCodeML
  EasyCodeML: A visual tool for analysis of selection using CodeML
  ☆83Updated 2 years ago
• qichao1984 / NCyc
  ☆53Updated 5 years ago
• yuezhengfu / CNPS.cycle
  This is an R package for element cycle analysis using metagenomic data.
  ☆40Updated 5 months ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆47Updated 4 months ago
• yedeng-lab / iNAP
  Integrated Network Analysis Pipeline
  ☆18Updated last year
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago