☆21Apr 25, 2025Updated 10 months ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below
Sorting:
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated last month
- Command line interface for QIIME 2☆19Mar 5, 2026Updated 2 weeks ago
- Prototype graphical user interface for QIIME 2☆15Feb 27, 2023Updated 3 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 2 months ago
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 3 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Generate Galaxy tool descriptions automatically from QIIME 2 actions.☆20Jan 27, 2026Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆82Mar 2, 2023Updated 3 years ago
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated last month
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Dec 19, 2023Updated 2 years ago
- QIIME 2 plugin supporting taxonomic classification☆21Updated this week
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- Rachis Framework (Formerly Known as QIIME 2 Framework (Q2F))☆525Mar 13, 2026Updated last week
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 7 months ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24May 3, 2019Updated 6 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Various functions for analysis of microbial community data☆47Oct 1, 2025Updated 5 months ago
- ☆29Jan 16, 2024Updated 2 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- ☆39May 3, 2017Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- A companion R package for the MicrobiomeAnalyst web server☆131Mar 7, 2026Updated 2 weeks ago
- Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples☆34Apr 4, 2025Updated 11 months ago
- ☆17Feb 26, 2026Updated 3 weeks ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- ☆19Jul 3, 2022Updated 3 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 7 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆73Sep 1, 2022Updated 3 years ago
- akutils with massive updates over v1.1 to functionality and command line interface.☆15Jun 25, 2019Updated 6 years ago
- ☆13Aug 13, 2024Updated last year
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year