qiime2 / docsLinks
☆21Updated 3 months ago
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Sample search by metadata and features☆47Updated last year
- Statistical analysis for sparse high-throughput sequencing☆69Updated 7 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 9 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.☆81Updated 6 years ago
- Vanilla regression methods for microbiome differential abundance analysis☆59Updated 4 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 6 months ago
- Rapid and scalable correlation estimation for compositional data☆92Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year
- Bioinformatics Tools☆89Updated last week
- Woltka: a versatile meta'omic data classifier☆75Updated 4 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- ☆23Updated 7 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆62Updated 11 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- MEGAN Community Edition☆72Updated last year
- StaG Metagenomic Workflow Collaboration☆29Updated 11 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated 3 months ago
- compositional data analysis toolbox☆59Updated 2 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆128Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 weeks ago
- ☆73Updated 4 years ago
- ☆35Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago