qiime2 / docsLinks
☆21Updated last month
Alternatives and similar repositories for docs
Users that are interested in docs are comparing it to the libraries listed below
Sorting:
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆59Updated 9 months ago
- Sample search by metadata and features☆47Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- ☆23Updated 6 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- functions for analyzing phyloseq data☆27Updated 4 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A tool for agile functional analysis of shotgun metagenomic data☆24Updated 8 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆36Updated 2 months ago
- qiime2 plugin for aldex2 for differential abundance analysis☆10Updated 5 years ago
- StaG Metagenomic Workflow Collaboration☆29Updated 9 months ago
- GraftM - Rapid community profiles from metagenomes☆45Updated 10 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated 2 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- Workshop materials for shotgun metagenomics☆36Updated 7 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Visualize microbiome data with black magic ggtree☆68Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆73Updated 2 years ago