Workflow for qiime2 workshop
☆15Apr 17, 2024Updated last year
Alternatives and similar repositories for HCGS_Metabarcoding_Tutorials
Users that are interested in HCGS_Metabarcoding_Tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bacterial Genome Assembly and Assessment☆27Nov 21, 2025Updated 4 months ago
- ☆15Mar 14, 2023Updated 3 years ago
- ☆20Jan 23, 2019Updated 7 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Mar 16, 2026Updated 3 weeks ago
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- A tool for identification of plant long non-coding RNAs.☆10Aug 8, 2023Updated 2 years ago
- ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes☆28Feb 15, 2019Updated 7 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- ☆11Apr 5, 2021Updated 5 years ago
- Pipeline for lncRNA, Circular RNA, and novel mRNA identification.☆11May 5, 2023Updated 2 years ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- Benchmark empirical datasets for phylogenetic method development☆19Dec 5, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Assign taxonomy with blast, can be used for qiime☆25Mar 25, 2025Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 3 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 4 years ago
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆22Sep 13, 2023Updated 2 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆17Nov 23, 2020Updated 5 years ago
- For distributing patric related code☆27Dec 19, 2022Updated 3 years ago
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆23Mar 4, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Nextflow workshop materials November 2025☆18Mar 14, 2026Updated 3 weeks ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- Simplifying and remapping image colors.☆41Mar 3, 2025Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆86Aug 23, 2022Updated 3 years ago
- ☆31Oct 16, 2020Updated 5 years ago
- a collection of colabs useful for molecular biology☆32Feb 27, 2024Updated 2 years ago
- Documentation for circlize package☆43Apr 3, 2024Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Jul 2, 2025Updated 9 months ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- A single-cell RNA-seq pipeline☆26Apr 12, 2023Updated 2 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆39Jul 19, 2021Updated 4 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- BaekJoon Online Judge extension for VSCode☆21Jan 16, 2026Updated 2 months ago