Joseph7e / HCGS_Metabarcoding_Tutorials
Workflow for qiime2 workshop
☆12Updated 11 months ago
Alternatives and similar repositories for HCGS_Metabarcoding_Tutorials:
Users that are interested in HCGS_Metabarcoding_Tutorials are comparing it to the libraries listed below
- ☆18Updated 6 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Updated 7 years ago
- Pipeline to run qiime2 with snakemake☆16Updated 4 years ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆24Updated 2 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆49Updated 5 months ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆25Updated 8 years ago
- We help each other to study single-cell data☆16Updated 2 months ago
- A Python package for microbiome sequencing analysis with QIIME 2☆44Updated last year
- Workshop on Genomics - Genomics Adventure☆40Updated 2 months ago
- Making whole bacterial genome sequencing data analysis easy☆103Updated 4 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆80Updated last week
- ☆29Updated 3 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- ☆41Updated 4 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 2 months ago
- Scripts and libraries for Environmental Genomics☆37Updated last month
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆32Updated 5 years ago
- Micro 612 genomics workshop☆37Updated 3 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆53Updated last week
- An R package designed for drawing gene arrow maps☆74Updated 2 weeks ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆35Updated 2 weeks ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆53Updated 3 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆29Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Collection of scripts for bacterial genomics☆45Updated 5 years ago