Alternatives and similar repositories for HCGS_Metabarcoding_Tutorials

Users that are interested in HCGS_Metabarcoding_Tutorials are comparing it to the libraries listed below

• BikLab / BITMaB2-Tutorials
  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…
  ☆22Updated 7 years ago
• IEkAdN / BactSNP
  ☆18Updated 6 years ago
• shu251 / tagseq-qiime2-snakemake
  Pipeline to run qiime2 with snakemake
  ☆16Updated 5 years ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆30Updated 2 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆26Updated last month
• hmgene / mudcookies
  We help each other to study single-cell data
  ☆16Updated 5 months ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆51Updated 8 months ago
• sbslee / dokdo
  A Python package for microbiome sequencing analysis with QIIME 2
  ☆46Updated last year
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated 2 weeks ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆80Updated this week
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆88Updated last week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆80Updated 2 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆32Updated 2 years ago
• biovcnet / biovcnet.github.io
  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
  ☆61Updated 3 years ago
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 8 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆60Updated 9 months ago
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆107Updated 2 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆119Updated last year
• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• epi2me-labs / wf-16s
  ☆31Updated 2 months ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• CDCgov / phoenix
  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
  ☆75Updated this week
• treangenlab / emu
  ☆54Updated 4 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆116Updated 5 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆75Updated 3 weeks ago
• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆19Updated last year
• ignasrum / hocort
  HoCoRT - Remove specific organisms from sequencing reads
  ☆16Updated 5 months ago
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆12Updated 3 years ago