Joseph7e / HCGS_Metabarcoding_Tutorials
Workflow for qiime2 workshop
☆12Updated last year
Alternatives and similar repositories for HCGS_Metabarcoding_Tutorials:
Users that are interested in HCGS_Metabarcoding_Tutorials are comparing it to the libraries listed below
- ☆18Updated 6 years ago
- Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…☆22Updated 7 years ago
- We help each other to study single-cell data☆16Updated 3 months ago
- Materials and tutorials for the 2020 ISB Microbiome Course☆30Updated 2 years ago
- Pipeline to run qiime2 with snakemake☆16Updated 5 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆25Updated 2 months ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆49Updated 6 months ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆25Updated 8 years ago
- ☆85Updated 11 months ago
- A Python package for microbiome sequencing analysis with QIIME 2☆44Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- Notes on SNP-related tools and genome variation analysis☆29Updated 3 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 3 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆29Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Resources for bioinformatics jobs☆51Updated last year
- An R package designed for drawing gene arrow maps☆76Updated this week
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆115Updated 11 months ago
- A microbiome analysis toolkit for R☆22Updated last year
- ☆29Updated last week
- Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes☆60Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆105Updated 5 months ago
- ☆41Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆36Updated 3 years ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆11Updated last week
- (Meta-)genome screening for functional and natural product gene sequences☆84Updated 2 weeks ago
- Metagenomics Workshop☆28Updated 8 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆75Updated 2 months ago
- Command line interface for QIIME 2☆19Updated this week