Alternatives and similar repositories for HCGS_Metabarcoding_Tutorials

Users that are interested in HCGS_Metabarcoding_Tutorials are comparing it to the libraries listed below

• IEkAdN / BactSNP
  ☆18Updated 6 years ago
• BikLab / BITMaB2-Tutorials
  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…
  ☆22Updated 7 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆26Updated 4 months ago
• shu251 / tagseq-qiime2-snakemake
  Pipeline to run qiime2 with snakemake
  ☆16Updated 5 years ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆31Updated 2 years ago
• hmgene / mudcookies
  We help each other to study single-cell data
  ☆16Updated 8 months ago
• sbslee / dokdo
  A Python package for microbiome sequencing analysis with QIIME 2
  ☆45Updated last year
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 8 years ago
• mdozmorov / SNP_notes
  Notes on SNP-related tools and genome variation analysis
  ☆28Updated 3 weeks ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆51Updated last month
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated 3 months ago
• SegataLab / lefse
  ☆84Updated last year
• biovcnet / biovcnet.github.io
  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
  ☆62Updated 3 years ago
• olabiyi / snakemake-workflow-qiime2
  Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
  ☆16Updated last year
• lskatz / awesome-bioinformatics-jobs
  Resources for bioinformatics jobs
  ☆52Updated 2 months ago
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆12Updated 3 years ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆91Updated last week
• KwanLab / Autometa
  Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
  ☆44Updated 8 months ago
• nearinj / Comparison_of_DA_microbiome_methods
  ☆56Updated last year
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆88Updated 2 months ago
• epi2me-labs / wf-16s
  ☆36Updated last week
• biobakery / MetaPhlAn2
  ☆34Updated 4 years ago
• zellerlab / siamcat
  R package for Statistical Inference of Associations between Microbial Communities And host phenoType
  ☆56Updated last year
• xiaoli-dong / metaerg
  ☆40Updated 4 years ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆77Updated 2 weeks ago
• MBaysanLab / vcf-observer
  VCF Observer is a VCF file analysis, comparison, and visualization tool.
  ☆18Updated 8 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆120Updated last year
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆43Updated 3 weeks ago
• zhouyunyan / PIGC
  The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
  ☆28Updated 3 years ago