stjude / ROSE
ROSE: RANK ORDERING OF SUPER-ENHANCERS
☆45Updated 8 months ago
Alternatives and similar repositories for ROSE:
Users that are interested in ROSE are comparing it to the libraries listed below
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 3 weeks ago
- ATAC-seq processing pipeline☆32Updated 3 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- Tutorial Website☆57Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆64Updated this week
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- Analysis of Paired-Tag datasets☆39Updated last year
- ☆17Updated 10 months ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- ☆27Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 3 months ago
- ☆32Updated 10 months ago
- SNV calling from single cell sequencing☆96Updated 5 months ago
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆19Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- Single Cell Analysis of Five'Ends☆48Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method