Alternatives and similar repositories for ROSE

Users that are interested in ROSE are comparing it to the libraries listed below

• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆80Updated 3 years ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆23Updated 3 years ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆106Updated 10 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆61Updated 2 years ago
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆42Updated last year
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆69Updated 10 months ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆54Updated 3 years ago
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆62Updated 4 years ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• lkmklsmn / MitoTrace
  ☆18Updated last year
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆34Updated 3 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆59Updated 3 months ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆77Updated 6 months ago
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆68Updated this week
• akdess / CaSpER
  ☆88Updated 4 years ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆30Updated 5 months ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆61Updated 4 years ago
• liulab-dfci / RIMA_pipeline
  ☆86Updated 2 weeks ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• bvaldebenitom / SoloTE
  ☆32Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆22Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• quadbio / RNAseq_tutorial
  ☆29Updated 10 months ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆95Updated 5 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 8 months ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago