ROSE: RANK ORDERING OF SUPER-ENHANCERS
☆64Nov 14, 2025Updated 3 months ago
Alternatives and similar repositories for ROSE
Users that are interested in ROSE are comparing it to the libraries listed below
Sorting:
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- ☆11May 4, 2021Updated 4 years ago
- ☆12Dec 15, 2020Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- GENome Organisation Visual Analytics☆85Feb 3, 2026Updated last month
- ☆12Jul 19, 2019Updated 6 years ago
- mouse_fullStack_annotations☆13Jun 29, 2023Updated 2 years ago
- ☆13Dec 19, 2022Updated 3 years ago
- Package for analysis and characterization of differential TADs☆26Apr 25, 2022Updated 3 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆207May 19, 2018Updated 7 years ago
- HiC uniform processing pipeline☆63Nov 8, 2023Updated 2 years ago
- A collection of tools for Hi-C data analysis☆631Jan 31, 2026Updated last month
- ☆16May 30, 2022Updated 3 years ago
- ☆95Jul 6, 2025Updated 7 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Jun 17, 2025Updated 8 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Dec 18, 2022Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Feb 22, 2022Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Nov 3, 2022Updated 3 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- Client for the Bioconductor AnnotationHub web resource☆20Oct 30, 2025Updated 4 months ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21May 11, 2023Updated 2 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 3 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 4 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Dec 15, 2023Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Apr 16, 2025Updated 10 months ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆39Aug 22, 2025Updated 6 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Feb 2, 2026Updated last month