stjude / ROSE
ROSE: RANK ORDERING OF SUPER-ENHANCERS
☆47Updated 9 months ago
Alternatives and similar repositories for ROSE:
Users that are interested in ROSE are comparing it to the libraries listed below
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆58Updated last year
- ATAC-seq processing pipeline☆33Updated 3 years ago
- Analysis of Paired-Tag datasets☆41Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆19Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- scWGCNA☆59Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Pipeline for Cut&Tag analysis☆21Updated 2 weeks ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆43Updated 4 years ago
- Single Cell Analysis of Five'Ends☆49Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- ☆26Updated 9 months ago
- single-cell clustering based on alternative splicing landscapes☆20Updated last year
- ☆17Updated 10 months ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Updated 6 years ago
- ☆79Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆65Updated last week
- ☆85Updated 4 years ago
- ☆32Updated 10 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago