johnlees / seerLinks
sequence element (kmer) enrichment analysis
☆45Updated 3 years ago
Alternatives and similar repositories for seer
Users that are interested in seer are comparing it to the libraries listed below
Sorting:
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Hitting associations with k-mers☆44Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Updated 3 years ago
- ☆30Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 4 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Library of sketching functions used by PopPUNK☆31Updated 10 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- ☆29Updated 4 years ago