mw55309 / Kraken_db_install_scripts
Updated Kraken DB install scripts to cope with new-ish NCBI structure
☆46Updated 7 years ago
Alternatives and similar repositories for Kraken_db_install_scripts:
Users that are interested in Kraken_db_install_scripts are comparing it to the libraries listed below
- SURPI☆84Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- ☆81Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆114Updated this week
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- ☆23Updated 6 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year