mw55309 / Kraken_db_install_scriptsLinks
Updated Kraken DB install scripts to cope with new-ish NCBI structure
☆48Updated 8 years ago
Alternatives and similar repositories for Kraken_db_install_scripts
Users that are interested in Kraken_db_install_scripts are comparing it to the libraries listed below
Sorting:
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 9 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- ☆23Updated 7 years ago
- UCSC Nanopore☆44Updated 6 years ago
- ☆35Updated 2 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Synteny Imager☆64Updated 3 months ago
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- CRyPTIC data processing pipelines☆34Updated last year