filip-husnik / pseudofinderLinks
Detection of pseudogene candidates in bacterial and archaeal genomes.
☆52Updated last year
Alternatives and similar repositories for pseudofinder
Users that are interested in pseudofinder are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆76Updated 7 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- IS mapping software☆57Updated 4 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Reorients assembled microbial sequences☆131Updated 4 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Updated last year
- Bifrost graph gene caller.☆96Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated 2 weeks ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 7 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆74Updated last year
- ☆64Updated last year
- Precise host read removal☆110Updated 3 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- A toolbox for comparative genomics.☆107Updated 4 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago