filip-husnik / pseudofinderLinks
Detection of pseudogene candidates in bacterial and archaeal genomes.
☆50Updated last year
Alternatives and similar repositories for pseudofinder
Users that are interested in pseudofinder are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated 2 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- whole genome MLST analysis☆46Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 3 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 4 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆46Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 4 months ago
- IS mapping software☆56Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆50Updated last month
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- Reorients assembled microbial sequences☆125Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Prediction of prophages from bacterial genomes☆79Updated 2 months ago
- viralVerify: viral contig verification tool☆71Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆49Updated 9 months ago
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆71Updated 11 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago