jdidion / xphyle
Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compression format. (production)
☆21Updated 4 months ago
Alternatives and similar repositories for xphyle:
Users that are interested in xphyle are comparing it to the libraries listed below
- ☆14Updated 9 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 3 years ago
- Build sourmash databases for genbank.☆12Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆23Updated 2 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated 11 months ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- VCF Zarr Specification☆12Updated last week
- kaamer - protein identification based on amino acid kmers☆12Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆18Updated 6 months ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 4 years ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- reference free variant assembly☆33Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- http://www.combio.pl/alfree☆23Updated 2 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Flexible omics pipeline☆18Updated 6 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 3 years ago
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Updated 3 years ago
- Freelance bioinformaticians directory☆9Updated 2 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- python stuff I use☆19Updated 5 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆16Updated 2 years ago
- Hail: extract lines from a file, a la `head -n x | tail -n y`☆9Updated 4 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆26Updated 3 years ago