VisDunneRight / sequence_braidingLinks
☆17Updated 2 years ago
Alternatives and similar repositories for sequence_braiding
Users that are interested in sequence_braiding are comparing it to the libraries listed below
Sorting:
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago
- reference free variant assembly☆34Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 6 months ago
- my PhD thesis☆36Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Pan gGnome Viewer☆10Updated 3 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 11 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- blast, shmlast☆21Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 4 months ago
- de novo targeted gene assembly☆23Updated 4 years ago
- ☆24Updated last month
- Python bindings to minimap2☆16Updated 8 years ago