aaronmussig / PhyloDM
Efficient calculation of phylogenetic distance matrices.
☆47Updated 6 months ago
Alternatives and similar repositories for PhyloDM:
Users that are interested in PhyloDM are comparing it to the libraries listed below
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated last week
- Nail is an Alignment Inference tooL☆45Updated this week
- PHANOTATE: a tool to annotate phage genomes.☆73Updated 4 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated last week
- Strain resolver for metagenomics☆73Updated 8 months ago
- Recombination-free trees☆57Updated 3 weeks ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated last month
- Bacterial GWAS analysis☆39Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- tree visualization for tree + annotation data☆32Updated last week
- Strain Resolution ON Graphs☆47Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated 2 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 5 months ago
- Plasmid analysis using rearrangement distances☆41Updated 5 months ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Evaluating Nanopore-based bacterial variant calling☆18Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last week
- TAXnomic Profile Aggregation and STAndardisation☆39Updated 5 months ago
- A listing of software, tools and databases useful for virome analysis☆25Updated this week
- distance based phylogenetic placement☆26Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆16Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 6 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 4 months ago