Protein 3D Structure Prediction with DeepFold
☆19Aug 26, 2024Updated last year
Alternatives and similar repositories for deepfold
Users that are interested in deepfold are comparing it to the libraries listed below
Sorting:
- ☆11May 5, 2023Updated 2 years ago
- ☆17Aug 20, 2024Updated last year
- Kincore-Standalone2 - Python3 code for calculating the conformational state of typical protein kinases☆17Sep 18, 2023Updated 2 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 5 months ago
- Modelling of Large Protein Complexes☆39Aug 8, 2025Updated 6 months ago
- Flow-matching for coarse graining of miniproteins.☆19Nov 18, 2022Updated 3 years ago
- Protein and nucleic acid validation service☆94Mar 7, 2024Updated last year
- Predict protein local properties using sequence or profile information.☆23Nov 16, 2020Updated 5 years ago
- ☆19Nov 8, 2022Updated 3 years ago
- Generate A3M and TGT file from a given sequence in FASTA format.☆11Nov 16, 2020Updated 5 years ago
- ☆25Oct 8, 2024Updated last year
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- An Interpretable Self-Attention Network with block-attention and attention-attribution.☆12Sep 22, 2023Updated 2 years ago
- Generate intrinsically disordered peptide conformations via machine learning☆24May 26, 2024Updated last year
- Denoising diffusion probabilistic models for replica exchange☆25Feb 19, 2022Updated 4 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆28Jun 21, 2023Updated 2 years ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆33Dec 14, 2023Updated 2 years ago
- Temperature generator for Replica Exchange MD simulations☆29Dec 14, 2022Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Mar 8, 2023Updated 2 years ago
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆84Updated this week
- ☆73Mar 7, 2024Updated last year
- ☆70Feb 13, 2026Updated 2 weeks ago
- Neural Networks for Protein Sequence Alignment☆135Nov 11, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- ☆37Aug 28, 2023Updated 2 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- ☆11Nov 17, 2023Updated 2 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- R Package for Bootstrap Unit Root Tests☆10May 5, 2025Updated 9 months ago
- ☆11Updated this week
- ☆10Sep 29, 2023Updated 2 years ago
- A dependency-free cross-platform swiss army knife for PDB files.☆444Feb 3, 2026Updated last month
- ☆91Sep 25, 2024Updated last year
- Toolkit for alphafold3 input and output files☆97Updated this week
- ☆42Apr 12, 2024Updated last year
- FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.☆13Oct 20, 2025Updated 4 months ago
- Python package for site-directed spin labeling of proteins☆12Oct 13, 2025Updated 4 months ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week