newtonjoo / deepfold

Related projects ⓘ

Alternatives and complementary repositories for deepfold

• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆40Updated 9 months ago
• Furman-Lab / PatchMAN
  ☆24Updated 3 months ago
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆48Updated 3 months ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆15Updated 10 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆45Updated 3 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆25Updated 2 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆25Updated 5 months ago
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆36Updated 8 months ago
• SNU-CSSB / RF2-Lite
  ☆21Updated 5 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆33Updated 2 months ago
• GBLille / MassiveFold
  ☆55Updated last week
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆21Updated 3 months ago
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆26Updated 3 months ago
• dina-lab3D / CombFold
  ☆74Updated last month
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆20Updated 2 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 8 months ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated last year
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆24Updated 7 months ago
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆26Updated 11 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆20Updated last year
• bwicky / oligomer_hallucination
  ☆35Updated 11 months ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆41Updated this week
• beckham-lab / EpHod
  Deep learning prediction of enzyme optimum pH
  ☆25Updated 11 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆62Updated 4 months ago
• mirabdi / PDAnalysis
  ☆25Updated last year
• whitead / protein-emoji
  Files and utilities for protein-emoji
  ☆20Updated 2 years ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆19Updated 10 months ago