Alternatives and similar repositories for franklin:

Users that are interested in franklin are comparing it to the libraries listed below

• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated this week
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• blaxterlab / blobology
  Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …
  ☆46Updated 2 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆52Updated 4 years ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆61Updated 5 years ago
• CFSAN-Biostatistics / snp-pipeline
  SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…
  ☆59Updated last year
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 5 years ago
• guyduche / Blast2Bam
  Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
  ☆46Updated 3 years ago
• jnoms / virID
  Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
  ☆11Updated 4 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆55Updated 7 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆47Updated 3 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated 9 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆43Updated 2 years ago
• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆62Updated 3 years ago
• tanghaibao / quota-alignment
  Guided synteny alignment between duplicated genomes (within specified quota constraint)
  ☆58Updated 7 years ago
• dsarov / SPANDx
  SPANDx - Comparative genomics for next-generation haploid sequence data
  ☆22Updated 5 months ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆59Updated 6 years ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆15Updated 7 years ago
• jts / nanocorrect
  Experimental pipeline for correcting nanopore reads
  ☆39Updated 7 years ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆25Updated 2 years ago
• jgurtowski / ectools
  tools for error correction and working with long read data
  ☆44Updated 10 years ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• tseemann / VelvetOptimiser
  Automatically optimise three of Velvet's assembly parameters.
  ☆47Updated 2 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 2 months ago