Arcadia-Science / seqqcLinks
A Nextflow pipeline to identify quality control issues with new sequencing data.
☆28Updated 2 years ago
Alternatives and similar repositories for seqqc
Users that are interested in seqqc are comparing it to the libraries listed below
Sorting:
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆113Updated 3 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 4 months ago
- Convert genbank files to a swath of other formats☆20Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 4 months ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 3 years ago
- ☆25Updated 4 years ago
- Snakemake workflow management system and CLI generation tool☆61Updated last week
- Fast sequencing data quality metrics☆28Updated last month
- ☆27Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- ☆28Updated 4 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated last year
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 4 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago