Arcadia-Science / seqqc
A Nextflow pipeline to identify quality control issues with new sequencing data.
☆28Updated 2 years ago
Alternatives and similar repositories for seqqc:
Users that are interested in seqqc are comparing it to the libraries listed below
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆42Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last week
- This repository hosts a large collection of Nextflow snippets☆57Updated last month
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Updated 4 years ago
- interactive plots for differential expression analysis☆32Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆61Updated last week
- ☆19Updated 3 months ago
- ☆26Updated 4 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- A VSCode extension pack for nf-core developers.☆14Updated 2 weeks ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- ☆15Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 7 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆44Updated 3 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆30Updated 2 years ago
- crab go snap snap☆37Updated last month
- ☆25Updated 11 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. chromoMap — Interactive Genomic Visualization of Biological Data☆9Updated 3 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated 5 months ago
- Get, parse, and extract information from the SRA metadata files☆38Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆32Updated 8 months ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆35Updated last week