younglab / ROSELinks
ROSE: RANK ORDERING OF SUPER-ENHANCERS
☆17Updated 3 years ago
Alternatives and similar repositories for ROSE
Users that are interested in ROSE are comparing it to the libraries listed below
Sorting:
- Bayesian network plot for the enrichment analysis results☆67Updated last year
- ☆48Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- ☆63Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Updated 7 years ago
- Tutorial Website☆63Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated 2 years ago
- Multiscale embedded gene co-expression network analysis☆57Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 6 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Updated 3 years ago
- ☆90Updated 5 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆120Updated 6 months ago
- ☆53Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆34Updated 5 years ago
- CRCmapper: map core regulatory circuitry☆14Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆15Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆61Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago