ROSE: RANK ORDERING OF SUPER-ENHANCERS
☆17Aug 12, 2022Updated 3 years ago
Alternatives and similar repositories for ROSE
Users that are interested in ROSE are comparing it to the libraries listed below
Sorting:
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- ☆11May 4, 2021Updated 4 years ago
- ☆11Jun 17, 2023Updated 2 years ago
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 6 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- ☆19Aug 29, 2025Updated 6 months ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- ☆14Aug 9, 2017Updated 8 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆50Oct 22, 2021Updated 4 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated 11 months ago
- Single cell analysis in regenerative lineages and immune-mediated pruning in lung cancer metastasis☆23Jun 5, 2020Updated 5 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- ☆14Feb 18, 2026Updated last week
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 5 months ago
- ☆14Jul 1, 2025Updated 8 months ago
- Introduction to Machine Learning using scikit-learn and PyTorch☆10Sep 26, 2019Updated 6 years ago
- A package for the analysis of Imaging Mass Cytometry data☆14Jan 21, 2026Updated last month
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆13Aug 2, 2022Updated 3 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated last month
- ☆10Oct 24, 2024Updated last year
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- Code used in article "Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation".☆12Mar 21, 2023Updated 2 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- Basic plotting of tabular data for the command line.☆13Apr 14, 2022Updated 3 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 4 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- Biobb_amber is a BioBB category for AMBER MD package.☆14Dec 22, 2025Updated 2 months ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 10 months ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 2 years ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Feb 5, 2026Updated 3 weeks ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Aug 1, 2025Updated 7 months ago
- ☆12Dec 15, 2020Updated 5 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 3 years ago