STAR based ENCODE Long RNA-Seq processing pipeline
☆96Apr 16, 2021Updated 5 years ago
Alternatives and similar repositories for long-rna-seq-pipeline
Users that are interested in long-rna-seq-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 6 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 6 years ago
- ☆160Updated this week
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 13 years ago
- Convert BAM files to bigWig files with a simple command☆20Nov 30, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Nov 15, 2021Updated 4 years ago
- ☆27May 8, 2022Updated 3 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- ☆23May 16, 2020Updated 5 years ago
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 9 years ago
- Tools to process and analyze deep sequencing data.☆757Jul 23, 2025Updated 8 months ago
- 361 Division - Scientific Training, Education and Learning☆28Oct 1, 2020Updated 5 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆271May 5, 2023Updated 2 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Aug 25, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆470Apr 7, 2026Updated last week
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- splicing and feature maps for RBPs☆25Mar 11, 2026Updated last month
- Metadata database for ENCODE project☆114Updated this week
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- New user☆42Oct 1, 2020Updated 5 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Apr 26, 2022Updated 3 years ago
- ENCODE ChIP-seq pipeline☆277Feb 15, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Git使用手册☆18Mar 10, 2019Updated 7 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 8 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆200Jan 30, 2026Updated 2 months ago
- Genetics training camp☆21Sep 8, 2020Updated 5 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 9 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆64Jun 22, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- RNA-seq aligner☆2,178Mar 18, 2025Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated last year
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 8 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- IDR☆176Sep 18, 2018Updated 7 years ago