STAR based ENCODE Long RNA-Seq processing pipeline
☆96Apr 16, 2021Updated 5 years ago
Alternatives and similar repositories for long-rna-seq-pipeline
Users that are interested in long-rna-seq-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 7 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆125Mar 23, 2020Updated 6 years ago
- ☆169Apr 13, 2026Updated 6 months ago
- This repository contains the source codes for the manuscript being reviewed.☆10May 20, 2017Updated 9 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Convert BAM files to bigWig files with a simple command☆19Nov 30, 2018Updated 7 years ago
- ☆18Nov 15, 2021Updated 4 years ago
- ☆27May 8, 2022Updated 4 years ago
- ☆18Sep 6, 2022Updated 4 years ago
- 361 Division - Scientific Training, Education and Learning☆28Oct 1, 2020Updated 6 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆85Aug 25, 2020Updated 6 years ago
- 软件方面的包 (包括各种芯片数据处理,NGS数据处理,差异分析等等!)☆14Apr 23, 2016Updated 10 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- New user☆42Oct 1, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated 3 weeks ago
- ☆25May 16, 2020Updated 6 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆479Aug 7, 2026Updated 2 months ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- Metadata database for ENCODE project☆114Oct 6, 2026Updated 3 weeks ago
- Git使用手册☆19Mar 10, 2019Updated 7 years ago
- IDR☆179Sep 18, 2018Updated 8 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RNA-seq aligner☆2,276Mar 18, 2025Updated last year
- microRNA profiling pipeline☆83Jan 18, 2022Updated 4 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- Quick mining and visualization of NGS data by integrating genomic databases☆272May 5, 2023Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆42Apr 26, 2022Updated 4 years ago
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- Genetics training camp☆21Sep 8, 2020Updated 6 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ENCODE ATAC-seq pipeline☆460Jul 18, 2024Updated 2 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆141Dec 15, 2022Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Jun 4, 2024Updated 2 years ago
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 9 months ago
- ☆11Dec 3, 2013Updated 12 years ago