ajmazurie / kegg-animate-pathway
Command-line utility to color objects of a KEGG pathway with arbitrary colors
☆32Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for kegg-animate-pathway
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆31Updated 8 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- documentation for trackViewer☆29Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆40Updated 7 years ago
- Genomic Association Tester☆29Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Updated 9 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- ☆22Updated 3 months ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 7 years ago
- ☆23Updated 3 months ago
- Adapters for trimming☆30Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- ☆30Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆45Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- KOBAS: a command line tool for identifying significant pathways from genomic data☆30Updated 14 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Plant small RNA target prediction tool☆25Updated 7 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 3 years ago
- RPKM for RNASeq counts☆16Updated 4 years ago