ENCODE-DCC / chip-seq-pipelineLinks
ENCODE Uniform processing pipeline for ChIP-seq
☆123Updated 5 years ago
Alternatives and similar repositories for chip-seq-pipeline
Users that are interested in chip-seq-pipeline are comparing it to the libraries listed below
Sorting:
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- A short tutorial on how to use RSEM☆137Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆109Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ☆137Updated 6 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- IDR☆172Updated 6 years ago
- Detecting sites of genomic enrichment☆192Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆110Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆222Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆188Updated 5 years ago
- ☆117Updated last year
- ☆153Updated 2 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆207Updated 3 weeks ago
- ☆118Updated 6 years ago
- ☆148Updated 2 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆109Updated 5 years ago
- ASCAT R package☆186Updated 4 months ago
- ☆87Updated last month
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆149Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆164Updated 2 months ago
- deconstructSigs☆142Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆139Updated 11 months ago
- circular RNA analysis toolset☆85Updated 10 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆202Updated 7 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆255Updated 6 months ago