ENCODE Uniform processing pipeline for ChIP-seq
☆125Mar 23, 2020Updated 6 years ago
Alternatives and similar repositories for chip-seq-pipeline
Users that are interested in chip-seq-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 5 years ago
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 7 years ago
- MACS -- Model-based Analysis of ChIP-Seq☆789Updated this week
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ChIP-seq analysis notes from Ming Tang☆854Aug 5, 2024Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- ☆11Dec 3, 2013Updated 12 years ago
- AQUAS TF and histone ChIP-seq pipeline☆111Jun 21, 2022Updated 4 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆133Jan 1, 2026Updated 10 months ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- wgs_pipeline☆18Dec 3, 2013Updated 12 years ago
- Code for finding putative enhancers using Hi-C data☆28Feb 27, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tutorial for AMSI BioInfoSummer 2018☆30Dec 3, 2018Updated 7 years ago
- ENCODE ATAC-seq pipeline☆460Jul 18, 2024Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆271May 5, 2023Updated 3 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- nucleosome calling using ATAC-seq☆113Dec 20, 2020Updated 5 years ago
- ☆102Jun 16, 2026Updated 4 months ago
- HiC uniform processing pipeline☆67Nov 8, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆202Jan 30, 2026Updated 9 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- A tool for bigWig files.☆119May 23, 2018Updated 8 years ago
- DCC/DAC methylation pipeline source☆55Jul 29, 2020Updated 6 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 10 years ago
- Convert BAM files to bigWig files with a simple command☆19Nov 30, 2018Updated 7 years ago
- IDR☆179Sep 18, 2018Updated 8 years ago
- ☆23Aug 11, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 8 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- Published methods☆15Oct 19, 2016Updated 10 years ago
- ☆12Mar 17, 2023Updated 3 years ago
- 软件方面的包 (包括各种芯片数据处理，NGS数据处理，差异分析等等！)☆14Apr 23, 2016Updated 10 years ago