ENCODE-DCC / chip-seq-pipelineLinks
ENCODE Uniform processing pipeline for ChIP-seq
☆123Updated 5 years ago
Alternatives and similar repositories for chip-seq-pipeline
Users that are interested in chip-seq-pipeline are comparing it to the libraries listed below
Sorting:
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- ☆144Updated 6 years ago
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 2 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆146Updated 2 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆226Updated last year
- ☆120Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆105Updated 3 years ago
- IDR☆175Updated 7 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆191Updated 5 years ago
- ☆118Updated 7 years ago
- ☆156Updated 3 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- ASCAT R package☆192Updated 3 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆220Updated last month
- ☆91Updated 5 months ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆156Updated last year
- ☆156Updated 7 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆150Updated last year
- deconstructSigs☆144Updated 2 years ago
- Quick mining and visualization of NGS data by integrating genomic databases☆268Updated 2 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆237Updated 3 weeks ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆116Updated 4 years ago
- Generate IGV style locus tracks from bigWig files in R☆175Updated last year
- ATAC-seq snakemake pipeline☆88Updated 5 years ago