ENCODE-DCC / chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
☆122Updated 4 years ago
Alternatives and similar repositories for chip-seq-pipeline:
Users that are interested in chip-seq-pipeline are comparing it to the libraries listed below
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- ☆126Updated 6 years ago
- AQUAS TF and histone ChIP-seq pipeline☆106Updated 2 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆107Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆116Updated last year
- Detecting sites of genomic enrichment☆190Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆123Updated 6 months ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆138Updated last year
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆146Updated 2 years ago
- Generate IGV style locus tracks from bigWig files in R☆154Updated 3 months ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- ATAC-seq and DNase-seq processing pipeline☆165Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆212Updated 8 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆197Updated last week
- chromatin Variability Across Regions (of the genome!)☆165Updated 7 months ago
- Quick mining and visualization of NGS data by integrating genomic databases☆263Updated last year
- ☆118Updated 6 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆87Updated 3 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆183Updated 4 years ago
- ASCAT R package☆174Updated 2 months ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆140Updated last month
- A tool for bigWig files.☆119Updated 6 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago