yarden / MISOLinks
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
☆137Updated 3 years ago
Alternatives and similar repositories for MISO
Users that are interested in MISO are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆118Updated 7 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 5 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆84Updated 11 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- ☆72Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆99Updated 4 years ago
- ☆92Updated 6 months ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- Publication quality NGS track plotting☆117Updated 3 months ago
- Galaxy RNA workbench☆41Updated 5 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Tools for working with BUS files☆102Updated 7 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆135Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- BISulfite-seq CUI Toolkit☆69Updated 3 months ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆157Updated 5 months ago
- Tools for analyzing DNA methylation data☆44Updated last week
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆77Updated 5 years ago