yarden / MISOLinks
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
☆137Updated 3 years ago
Alternatives and similar repositories for MISO
Users that are interested in MISO are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆118Updated 7 years ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 4 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆156Updated 4 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ☆91Updated 5 months ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆135Updated last year
- Publication quality NGS track plotting☆117Updated 2 months ago
- Tools for working with BUS files☆102Updated 6 months ago
- ☆72Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- BISulfite-seq CUI Toolkit☆69Updated 2 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 2 weeks ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆61Updated 6 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago