SchulzLab / TEPICLinks
Annotation of genomic regions using transcription factor binding sites and epigenetic data
☆41Updated 3 years ago
Alternatives and similar repositories for TEPIC
Users that are interested in TEPIC are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 10 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆34Updated 9 months ago
- ☆43Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆51Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- ☆37Updated 6 years ago
- Signed LD profile regression code☆18Updated 2 months ago
- Single-CELL rna-seq analysis software☆39Updated 7 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆45Updated 5 years ago
- bradner lab computation pipeline scripts☆54Updated last month
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 4 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- An information-theoretic pipeline for methylation analysis of WGBS data☆24Updated 6 years ago
- ☆84Updated 4 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Exon-exon splice junctions across SRA☆42Updated 4 years ago