SchulzLab / TEPICLinks
Annotation of genomic regions using transcription factor binding sites and epigenetic data
☆41Updated 3 years ago
Alternatives and similar repositories for TEPIC
Users that are interested in TEPIC are comparing it to the libraries listed below
Sorting:
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated 11 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆34Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Single-CELL rna-seq analysis software☆39Updated 8 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- Normalization for single cell RNA-seq data☆50Updated 6 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- ☆55Updated 10 months ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- binned motif enrichment analysis and visualisation☆43Updated last month
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Modelling DNA methylation profiles☆24Updated 5 years ago
- R package with motifs for use with chromVAR☆28Updated 8 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- ☆43Updated 2 years ago
- Fast motif matching in R☆46Updated last year