nunofonseca / irapLinks
integrated RNA-seq Analysis Pipeline
☆83Updated 6 years ago
Alternatives and similar repositories for irap
Users that are interested in irap are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆119Updated 7 years ago
- Transcript quantification import for modular pipelines☆141Updated last week
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 8 months ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 11 months ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆130Updated last year
- A Python-based EGA download client☆105Updated 11 months ago
- ☆117Updated last year
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆94Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆109Updated last month
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 2 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated last year