integrated RNA-seq Analysis Pipeline
☆84Feb 6, 2019Updated 7 years ago
Alternatives and similar repositories for irap
Users that are interested in irap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Readme☆10Mar 15, 2020Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 9 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- exprAnalysis☆15Dec 19, 2016Updated 9 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Streaming fragment assignment and quantification for high-throughput sequencing.☆38Nov 14, 2019Updated 6 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆105Jul 1, 2022Updated 4 years ago
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 6 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50May 28, 2019Updated 7 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22May 25, 2021Updated 5 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- lncRNA-screen☆25Apr 19, 2017Updated 9 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated last week
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 5 years ago
- ☆14May 23, 2016Updated 10 years ago
- A repository housing metadata and data files (or links to data files) that are being prepared as sample data bundles for various uses.☆13Feb 12, 2022Updated 4 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Use gene expression to predict phenotype sample information☆19Feb 13, 2018Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 6 years ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- parseR: Pipeline for rna-seq analysis in R☆17Jun 23, 2017Updated 9 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 9 years ago
- ☆11Mar 25, 2019Updated 7 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- Differential Count Data Analysis Toolbox☆62Jul 23, 2026Updated 2 weeks ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 11 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Free-access R books for beginners. Welcome to Fork it. Commercial use is forbidden!☆14Sep 16, 2018Updated 7 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Jun 25, 2019Updated 7 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago