nunofonseca / irapLinks
integrated RNA-seq Analysis Pipeline
☆84Updated 6 years ago
Alternatives and similar repositories for irap
Users that are interested in irap are comparing it to the libraries listed below
Sorting:
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Updated 6 years ago
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 7 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 2 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆95Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Statistical Analysis of RNA-Seq Tools☆108Updated 2 months ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Genomic Interactive Visualization Engine☆146Updated 2 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆67Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 5 months ago
- Documentation and description of AWS iGenomes S3 resource.☆118Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A Python-based EGA download client☆108Updated last year