nunofonseca / irapLinks
integrated RNA-seq Analysis Pipeline
☆84Updated 6 years ago
Alternatives and similar repositories for irap
Users that are interested in irap are comparing it to the libraries listed below
Sorting:
- A tool for bigWig files.☆119Updated 7 years ago
- Transcript quantification import for modular pipelines☆141Updated 3 weeks ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- nucleosome calling using ATAC-seq☆108Updated 4 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 3 weeks ago
- ISCB DC Area Regional Student Group - Summer 2016 Workshop☆48Updated 9 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆94Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)☆54Updated 4 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- A Python-based EGA download client☆107Updated last year
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆118Updated 3 weeks ago
- R package for genomic feature analysis and visualization☆79Updated 6 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Updated 2 years ago