New user
☆42Oct 1, 2020Updated 6 years ago
Alternatives and similar repositories for RNA-Seq
Users that are interested in RNA-Seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Sep 22, 2017Updated 9 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 9 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 5 years ago
- parseR: Pipeline for rna-seq analysis in R☆17Jun 23, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- RNA-seq workflow: exploratory analysis and differential expression☆81Apr 14, 2026Updated 6 months ago
- ☆14Aug 9, 2016Updated 10 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26May 7, 2020Updated 6 years ago
- RNAseq Data Analysis Course, Cambridge University Bioinformatics Training Facility, September 2019☆17Nov 22, 2019Updated 6 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆17Mar 11, 2021Updated 5 years ago
- stageR package☆13May 8, 2026Updated 5 months ago
- Exon-Intron Split Analysis (EISA) in R☆18Aug 27, 2026Updated 2 months ago
- A pipeline for the computational evaluation of RNA-Seq data☆40Oct 13, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆23Sep 7, 2019Updated 7 years ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 5 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Sphinx documentation source for a computational genomics tutorial.☆36Dec 25, 2020Updated 5 years ago
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,436May 31, 2023Updated 3 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 9 years ago
- This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster☆171Mar 23, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated 2 years ago
- R package for bcbio single-cell RNA-seq analysis.☆31Sep 9, 2024Updated 2 years ago
- RPKM for RNASeq counts☆16Oct 24, 2020Updated 6 years ago
- ☆11Oct 18, 2026Updated last week
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆12Sep 30, 2026Updated 3 weeks ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆34Oct 11, 2022Updated 4 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Mar 6, 2024Updated 2 years ago
- Prototype graphical user interface for QIIME 2☆15Feb 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 2 months ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford☆67Jan 9, 2022Updated 4 years ago
- Using continual sentiment analysis of social content (twitter, reddit, news, etc), perform profitable trades by following the sentiment/p…☆13Dec 9, 2019Updated 6 years ago
- A collection of R code for dealing with SNP data and analyses☆24May 16, 2023Updated 3 years ago
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 3 years ago