ENCODE-DCC / encodedLinks
Metadata database for ENCODE project
☆114Updated last week
Alternatives and similar repositories for encoded
Users that are interested in encoded are comparing it to the libraries listed below
Sorting:
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- RNASeq pipeline☆36Updated 6 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- bradner lab computation pipeline scripts☆54Updated 5 months ago
- DNAnexus platform client libraries☆104Updated this week
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80Updated 5 years ago
- ☆120Updated 2 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 2 weeks ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆85Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆102Updated 2 years ago
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆42Updated 5 years ago
- ☆63Updated 9 years ago
- WashU Epigenome Browser☆76Updated 10 months ago
- Explore gnomAD datasets on the web☆85Updated last week
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ☆69Updated 3 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆86Updated 3 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆54Updated 6 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 6 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Browser for ExAC consortium data☆106Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- A Python-based EGA download client☆110Updated last year
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆113Updated 3 years ago
- See the main fork of this repository here >>>☆39Updated 3 weeks ago
- A novel pipeline framework to accelerate bioinformatics analysis☆30Updated 3 months ago