Metadata database for ENCODE project
☆114Feb 21, 2026Updated last week
Alternatives and similar repositories for encoded
Users that are interested in encoded are comparing it to the libraries listed below
Sorting:
- The SnoVault general purpose hybrid object-relational database☆16Mar 7, 2024Updated last year
- ☆12Mar 17, 2023Updated 2 years ago
- Data Standards Hackathon for NGS based typing.☆14Feb 2, 2026Updated 3 weeks ago
- ☆11Feb 16, 2021Updated 5 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆13Aug 23, 2022Updated 3 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 4 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 6 years ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Nov 8, 2018Updated 7 years ago
- ENCODE ChIP-seq pipeline☆277Feb 15, 2024Updated 2 years ago
- Documentation for the MatchmakerExchange APIs☆34Updated this week
- ENCODE Uniform processing pipeline for ChIP-seq☆124Mar 23, 2020Updated 5 years ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 3 years ago
- Easily launch cloud applications.☆42Nov 24, 2024Updated last year
- The WES API is a standard way to run and manage portable workflows.☆88Feb 20, 2026Updated last week
- ☆18Nov 15, 2021Updated 4 years ago
- DCC/DAC methylation pipeline source☆57Jul 29, 2020Updated 5 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 8 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Jul 23, 2025Updated 7 months ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated 3 weeks ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39May 3, 2025Updated 9 months ago
- EpiGenome Gateway - WashU EpiGenome Browser☆21Oct 11, 2021Updated 4 years ago
- ☆157Nov 3, 2022Updated 3 years ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 8 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- API for the IGS data portal☆11May 6, 2021Updated 4 years ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Jun 4, 2021Updated 4 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- CWL for GDC DNASeq workflows☆23Feb 6, 2026Updated 3 weeks ago
- Tools to process and analyze deep sequencing data.☆751Jul 23, 2025Updated 7 months ago