Metadata database for ENCODE project
☆114Oct 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for encoded
Users that are interested in encoded are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The SnoVault general purpose hybrid object-relational database☆16Mar 7, 2024Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Apr 16, 2021Updated 5 years ago
- ☆12Mar 17, 2023Updated 3 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆11Jul 13, 2019Updated 7 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆125Mar 23, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆18Sep 6, 2022Updated 4 years ago
- ☆32Jul 11, 2018Updated 8 years ago
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Sep 25, 2019Updated 7 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- ENCODE ChIP-seq pipeline☆283Feb 15, 2024Updated 2 years ago
- Variant to disease dataset workflows for Open Targets Genetics☆14May 11, 2026Updated 5 months ago
- DCC/DAC methylation pipeline source☆55Jul 29, 2020Updated 6 years ago
- Spliced alignment evaluation software☆13Oct 28, 2013Updated 13 years ago
- ☆18May 12, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆30Jul 15, 2021Updated 5 years ago
- ☆18Nov 15, 2021Updated 4 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 2 months ago
- Tools to process and analyze deep sequencing data.☆772Updated this week
- Data Standards Hackathon for NGS based typing.☆14Aug 11, 2026Updated 2 months ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- Python applications and libraries for working with PGS data and the PGS Catalog☆15Oct 12, 2026Updated 2 weeks ago
- IDR☆179Sep 18, 2018Updated 8 years ago
- CWL for GDC DNASeq workflows☆23Sep 27, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 4 years ago
- Pipelines developed and used by 4DN-DCIC in Common Workflow Language☆10Jul 11, 2024Updated 2 years ago
- A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).☆21Aug 28, 2017Updated 9 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- ☆11Updated this week
- ☆169Apr 13, 2026Updated 6 months ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆115Apr 13, 2026Updated 6 months ago
- ☆13Nov 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- API for the IGS data portal☆11May 6, 2021Updated 5 years ago
- This repo is for the metadata schemas associated with the HCA☆71Aug 8, 2026Updated 2 months ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- RNA-seq aligner☆2,277Mar 18, 2025Updated last year