Alternatives and similar repositories for ESM-GearNet:

Users that are interested in ESM-GearNet are comparing it to the libraries listed below

• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆104Updated last month
• huankoh / PSICHIC
  PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…
  ☆100Updated 10 months ago
• wengong-jin / DSMBind
  ☆87Updated 6 months ago
• zhanghaicang / carbonmatrix_public
  ☆111Updated last month
• ai4protein / ProSST
  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.
  ☆112Updated last month
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆71Updated 6 months ago
• zaixizhang / Awesome-SBDD
  Papers about Structure-based Drug Design (SBDD)
  ☆110Updated 4 months ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆82Updated 11 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆177Updated last week
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆31Updated 4 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆86Updated 4 months ago
• BytedProtein / ByProt
  ☆183Updated 7 months ago
• THUNLP-MT / PepGLAD
  Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)
  ☆61Updated last week
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆35Updated last year
• JocelynSong / SurfPro
  ☆26Updated last month
• levinthal / Pallatom
  ☆91Updated 5 months ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆162Updated 2 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆68Updated 5 months ago
• smiles724 / ProtMD
  ☆64Updated 2 years ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆149Updated last year
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆32Updated 2 weeks ago
• zhengkangjie / ESM-AA
  ☆68Updated 2 months ago
• HBioquant / DiffBindFR
  Diffusion model based protein-ligand flexible docking method
  ☆104Updated 5 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆30Updated 6 months ago
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆52Updated last month
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆80Updated 3 months ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆64Updated this week
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆74Updated 10 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆58Updated last year