ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
☆116Oct 23, 2023Updated 2 years ago
Alternatives and similar repositories for ESM-GearNet
Users that are interested in ESM-GearNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆329Jun 13, 2025Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆276Apr 27, 2025Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆53Dec 3, 2024Updated last year
- Multimodal Pretraining for Unsupervised Protein Representation Learning☆22Jul 30, 2024Updated 2 years ago
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated 3 weeks ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- ☆39Jun 9, 2025Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆326Nov 15, 2025Updated 8 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆617Mar 8, 2026Updated 5 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆104Mar 18, 2023Updated 3 years ago
- ☆218Sep 24, 2024Updated last year
- Awesome Protein Representation Learning☆688Nov 16, 2024Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Aug 11, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆88Apr 21, 2026Updated 3 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆342Jul 25, 2025Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated 2 months ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated last year
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆105Oct 16, 2023Updated 2 years ago
- ☆2,894Jul 28, 2026Updated last week
- Contrastive learning harmonizing protein language models and natural language models☆43Jun 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆92Dec 4, 2023Updated 2 years ago
- ☆13Apr 18, 2022Updated 4 years ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 3 years ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 9 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Code for the ProteinMPNN paper☆1,822Aug 14, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,560May 2, 2025Updated last year
- Protein-ligand structure prediction☆241Jul 31, 2025Updated last year
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 2 years ago
- ☆144Jun 3, 2025Updated last year
- Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge☆47Oct 17, 2024Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,171Feb 7, 2024Updated 2 years ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆42Mar 22, 2026Updated 4 months ago