ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
☆111Oct 23, 2023Updated 2 years ago
Alternatives and similar repositories for ESM-GearNet
Users that are interested in ESM-GearNet are comparing it to the libraries listed below
Sorting:
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆315Jun 13, 2025Updated 8 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 9 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- ☆39Jun 9, 2025Updated 8 months ago
- Multimodal Pretraining for Unsupervised Protein Representation Learning☆22Jul 30, 2024Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆566Nov 19, 2025Updated 3 months ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆318Nov 15, 2025Updated 3 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- ☆212Sep 24, 2024Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆99Mar 18, 2023Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- Contrastive learning harmonizing protein language models and natural language models☆39Jun 12, 2024Updated last year
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Aug 11, 2023Updated 2 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 3 months ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 10 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- ☆21May 2, 2025Updated 9 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆99Oct 16, 2023Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- ☆31Dec 12, 2024Updated last year
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- ☆21Oct 22, 2024Updated last year
- ☆15Jan 27, 2025Updated last year
- Protein-ligand structure prediction☆238Jul 31, 2025Updated 7 months ago
- Code for the ProteinMPNN paper☆1,627Aug 14, 2024Updated last year
- ☆134Jun 3, 2025Updated 8 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- The bioplib library☆12Jul 25, 2023Updated 2 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,440May 2, 2025Updated 9 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆164Jul 30, 2025Updated 6 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Dec 4, 2023Updated 2 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- ☆51May 10, 2023Updated 2 years ago