wukevin / proteinclipLinks
Contrastive learning harmonizing protein language models and natural language models
☆39Updated last year
Alternatives and similar repositories for proteinclip
Users that are interested in proteinclip are comparing it to the libraries listed below
Sorting:
- Efficient implementatin of ESM family.☆78Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆87Updated last year
- ☆32Updated last year
- ☆73Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆125Updated last month
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆66Updated 3 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆111Updated 4 months ago
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆26Updated 2 months ago
- Metrics for our protein design competitions.☆35Updated last year
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆37Updated 6 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆58Updated 2 months ago
- Template-based protein design with Raygun☆76Updated 3 weeks ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 9 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆34Updated 3 weeks ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆108Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆90Updated 6 months ago
- ☆16Updated 10 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆42Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago