wukevin / proteinclipView external linksLinks
Contrastive learning harmonizing protein language models and natural language models
☆39Jun 12, 2024Updated last year
Alternatives and similar repositories for proteinclip
Users that are interested in proteinclip are comparing it to the libraries listed below
Sorting:
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 4 months ago
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆40Jun 27, 2025Updated 7 months ago
- ☆23Nov 6, 2024Updated last year
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 5 months ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆17May 24, 2024Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆163Jul 30, 2025Updated 6 months ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 10 months ago
- ☆85May 29, 2025Updated 8 months ago
- Bilingual Language Model for Protein Sequence and Structure☆297Jan 2, 2025Updated last year
- ☆39Jun 9, 2025Updated 8 months ago
- Homomer symmetry prediction from protein sequence☆41Mar 13, 2025Updated 11 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- This is the official repository of Prot2Token paper.☆38Jun 6, 2025Updated 8 months ago
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆74Feb 2, 2026Updated last week
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆146Jan 31, 2026Updated last week
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆74Sep 6, 2023Updated 2 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated last year
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Autoregressive fragment-based diffusion for target-aware ligand design☆32May 23, 2024Updated last year
- Evolutionary Algorithm with Diffusion Models for Protein Design☆30Jan 7, 2026Updated last month
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆111Oct 23, 2023Updated 2 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Apr 29, 2025Updated 9 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆50Mar 14, 2024Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Feb 3, 2026Updated last week
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆56Nov 5, 2025Updated 3 months ago
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆12Dec 27, 2023Updated 2 years ago
- Predicting molecular structure from multimodal spectroscopic data☆18Jan 21, 2026Updated 3 weeks ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆265Apr 27, 2025Updated 9 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆27Jan 8, 2024Updated 2 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 2 years ago
- ☆33Oct 14, 2024Updated last year
- This repository contains information on the creation, evaluation, and benchmark models for the L+M-24 Dataset. L+M-24 will be featured as…☆30Jan 23, 2025Updated last year
- ☆30Dec 12, 2024Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆33Oct 26, 2023Updated 2 years ago
- ☆35Mar 30, 2025Updated 10 months ago