Contrastive learning harmonizing protein language models and natural language models
☆44Jun 12, 2024Updated 2 years ago
Alternatives and similar repositories for proteinclip
Users that are interested in proteinclip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆51Mar 14, 2024Updated 2 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆33Jan 8, 2024Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- ☆40Jun 9, 2025Updated last year
- ☆12Jun 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 5 months ago
- Pretrained METL models with minimal dependencies☆18Sep 16, 2026Updated last month
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- Efficient implementatin of ESM family.☆89Sep 9, 2025Updated last year
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆46Mar 30, 2026Updated 7 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 7 months ago
- Bilingual Language Model for Protein Sequence and Structure☆329Mar 6, 2026Updated 8 months ago
- A Self-feedback Knowledge Elicitation Approach for Chemical Reaction Predictions☆11Aug 15, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆62Nov 5, 2025Updated last year
- ☆33Dec 12, 2024Updated last year
- Open source code for AlphaFold to extract protein embeddings☆27Jul 26, 2021Updated 5 years ago
- ☆26May 19, 2024Updated 2 years ago
- Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".☆13Dec 27, 2023Updated 2 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆115Oct 23, 2023Updated 3 years ago
- ☆97May 29, 2025Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆350Jul 25, 2025Updated last year
- Evolla: A frontier protein-language generative model designed to decode the molecular language of proteins.☆73Oct 19, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Must-read papers on NLP for science.☆56Jun 19, 2023Updated 3 years ago
- ☆17Feb 27, 2026Updated 8 months ago
- A web application that serves as an interface between a user and EnzyHTP's workflows.☆10Sep 19, 2026Updated last month
- A benchmark suite of five genomics tasks for evaluating DNA foundation models on long-range dependencies.☆15Oct 6, 2026Updated last month
- ☆26Apr 22, 2026Updated 6 months ago
- Miniprotein and antibody design pipeline for ESMFold2☆48Updated this week
- Code for InstructBioMol, implementing the Nature Machine Intelligence paper "Advancing Biomolecular Understanding and Design Following Hu…☆34Aug 2, 2025Updated last year
- ☆136Oct 29, 2026Updated last week
- 3D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modeling (ICLR 2025)☆21Oct 23, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆192Jul 24, 2026Updated 3 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆280Oct 31, 2026Updated last week
- A lightweight library for loading and manipulating biomolecular structures☆25Aug 8, 2026Updated 3 months ago
- This is the official repository of Prot2Token paper.☆40Jun 6, 2025Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆156Apr 16, 2025Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆174Sep 12, 2026Updated last month
- ☆26Nov 6, 2024Updated 2 years ago
Are these results useful?