Alternatives and similar repositories for proteinclip

Users that are interested in proteinclip are comparing it to the libraries listed below

• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆76Updated 2 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆99Updated 3 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆84Updated last year
• Exscientia / abodybuilder3
  ☆71Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 4 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 8 months ago
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆76Updated this week
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆88Updated 5 months ago
• yoakiyama / MSA_Pairformer
  ☆112Updated 2 weeks ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆64Updated 2 months ago
• AbSciBio / igdesign
  ☆47Updated 10 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 7 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆58Updated 3 weeks ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆103Updated last month
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆111Updated last month
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• jiaqingxie / DeepProtein
  Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)
  ☆35Updated 4 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆25Updated last year
• brineylab / BALM-paper
  ☆17Updated 10 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆61Updated 2 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆51Updated last year
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆41Updated last year
• programmablebio / ptm-mamba
  ☆81Updated 5 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆60Updated 2 weeks ago
• mnielLab / AbEpiTope-1.0
  AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…
  ☆25Updated last month
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆46Updated 7 months ago
• moritzgls / ESM-Effect
  ☆15Updated 9 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago