Contrastive learning harmonizing protein language models and natural language models
☆43Jun 12, 2024Updated 2 years ago
Alternatives and similar repositories for proteinclip
Users that are interested in proteinclip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 10 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 4 months ago
- [ACL 2024] ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training☆51Mar 14, 2024Updated 2 years ago
- ☆24Nov 6, 2024Updated last year
- ☆39Jun 9, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆33Jan 8, 2024Updated 2 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated 2 months ago
- Bilingual Language Model for Protein Sequence and Structure☆318Mar 6, 2026Updated 4 months ago
- Efficient implementatin of ESM family.☆85Sep 9, 2025Updated 10 months ago
- Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)☆45Mar 30, 2026Updated 4 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆105Apr 24, 2024Updated 2 years ago
- Model for predicting micro-millisecond motions from protein sequence and/or structure☆80Jul 8, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆26May 19, 2024Updated 2 years ago
- ☆25Apr 22, 2026Updated 3 months ago
- Open source code for AlphaFold to extract protein embeddings☆27Jul 26, 2021Updated 5 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆275Apr 27, 2025Updated last year
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆115Oct 23, 2023Updated 2 years ago
- ☆95May 29, 2025Updated last year
- ☆167Jul 24, 2026Updated last week
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆64Feb 3, 2026Updated 5 months ago
- Homomer symmetry prediction from protein sequence☆45Mar 13, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The Family of Diffusion Protein Language Models (DPLM)☆341Jul 25, 2025Updated last year
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated 11 months ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆61Nov 5, 2025Updated 8 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆61Jan 28, 2026Updated 6 months ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆16Oct 17, 2024Updated last year
- ☆135May 19, 2026Updated 2 months ago
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 4 months ago
- Evolla: A frontier protein-language generative model designed to decode the molecular language of proteins.☆69Apr 13, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆19May 24, 2024Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last week
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Official repository for the ProteinGym benchmarks☆456Mar 25, 2026Updated 4 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆80Sep 6, 2023Updated 2 years ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆676Jan 15, 2026Updated 6 months ago
- Linear-time prediction of proteome-scale microbial protein interactions☆40Jun 25, 2026Updated last month