Alternatives and similar repositories for proteinclip

Users that are interested in proteinclip are comparing it to the libraries listed below

• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆52Updated last month
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆79Updated last year
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆72Updated last week
• Exscientia / abodybuilder3
  ☆68Updated 10 months ago
• yoakiyama / MSA_Pairformer
  ☆95Updated last week
• jiaqingxie / DeepProtein
  Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)
  ☆31Updated 2 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆117Updated 6 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆92Updated 3 weeks ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆63Updated last week
• Profluent-AI / proseLM-public
  Adapting protein language models for structure-conditioned design
  ☆40Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 2 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 5 months ago
• AbSciBio / igdesign
  ☆45Updated 8 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated 10 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆49Updated 10 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆25Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆105Updated last month
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆82Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• moritzgls / ESM-Effect
  ☆15Updated 7 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆75Updated 7 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 6 months ago
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆46Updated 5 months ago
• bio-ontology-research-group / deepgo2
  ☆44Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆45Updated 2 years ago
• programmablebio / ptm-mamba
  ☆79Updated 3 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated 2 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆65Updated 9 months ago
• IBM / AFDistill
  Code for AlphaFold Distillation for Protein Design
  ☆21Updated this week