Alternatives and similar repositories for DiffDock

Users that are interested in DiffDock are comparing it to the libraries listed below

• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆746Updated last week
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,311Updated 10 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆724Updated 3 weeks ago
• gnina / gnina
  A deep learning framework for molecular docking
  ☆731Updated this week
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆545Updated last year
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆510Updated 4 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆564Updated last week
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆712Updated 2 months ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,105Updated this week
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆449Updated 5 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆586Updated 2 years ago
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,629Updated last year
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆989Updated last week
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆577Updated 10 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆658Updated last year
• ccsb-scripps / AutoDock-Vina
  AutoDock Vina
  ☆747Updated last week
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,212Updated 3 weeks ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆399Updated 11 months ago
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,692Updated last week
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆700Updated 2 years ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆359Updated last year
• microsoft / AI2BMD
  AI-powered ab initio biomolecular dynamics simulation
  ☆515Updated 4 months ago
• MolecularAI / REINVENT4
  AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.
  ☆500Updated last week
• nrbennet / dl_binder_design
  ☆321Updated 10 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆311Updated 7 months ago
• ccsb-scripps / AutoDock-GPU
  AutoDock for GPUs and other accelerators
  ☆481Updated 4 months ago
• dauparas / LigandMPNN
  ☆390Updated 4 months ago
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆607Updated 3 weeks ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆394Updated 11 months ago
• pharmai / plip
  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …
  ☆548Updated last month