DeepGraphLearning / ProtSTLinks
[ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
☆98Updated last year
Alternatives and similar repositories for ProtST
Users that are interested in ProtST are comparing it to the libraries listed below
Sorting:
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆90Updated 6 months ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆92Updated 2 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆66Updated last year
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆53Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆186Updated 10 months ago
- ☆198Updated 10 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆114Updated 5 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- The first large protein language model trained follows structure instructions.☆84Updated 2 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆65Updated 11 months ago
- ☆42Updated 2 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆109Updated last year
- Official implementation of "Learning the language of protein structures"☆37Updated last month
- ☆129Updated 2 years ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆130Updated 2 months ago
- ☆76Updated 2 months ago
- ☆73Updated 5 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆69Updated last month
- [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding☆149Updated 4 months ago
- Official repository of ReactZyme☆36Updated 9 months ago
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆102Updated last year
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆177Updated 2 years ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- ☆38Updated last month
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year
- Generative Language Modeling for Antibody Design☆159Updated 10 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆37Updated last year
- ☆106Updated 2 years ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆193Updated 3 months ago
- An awesome & curated list of docking papers☆113Updated 4 months ago