Multimodal Pretraining for Unsupervised Protein Representation Learning
☆22Jul 30, 2024Updated last year
Alternatives and similar repositories for Protein_Pretrain
Users that are interested in Protein_Pretrain are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆18May 7, 2024Updated 2 years ago
- Multimodal Contrastive Representation Learning in Augmented Biomedical Knowledge Graphs☆34Dec 8, 2025Updated 6 months ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning☆33May 17, 2024Updated 2 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆114Oct 23, 2023Updated 2 years ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆322Jun 13, 2025Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆48Jan 1, 2026Updated 6 months ago
- CrysMMNet: Multimodal Representation for Crystal Property Prediction (UAI-2023)☆21Jun 28, 2024Updated 2 years ago
- ☆22Mar 30, 2024Updated 2 years ago
- This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".☆18Jan 4, 2025Updated last year
- A command-line interface and Python library for generating AlphaFold3 input files.☆41Jan 2, 2026Updated 6 months ago
- DrugPipe: Generative artificial intelligence-assisted virtual screening pipeline for generalizable and efficient drug repurposing☆19Jun 9, 2025Updated last year
- [ICML2025] The official implementation of "PolyConf: Unlocking Polymer Conformation Generation through Hierarchical Generative Models"☆35Mar 18, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆24May 18, 2026Updated last month
- Code for AAAI24 paper Text-Guided Molecule Generation with Diffusion Language Model☆21Jun 24, 2025Updated last year
- Multiresolution Equivariant Graph Variational Autoencoder (MGVAE) https://arxiv.org/abs/2106.00967☆25Nov 12, 2024Updated last year
- Learning Structure-based Pocket Representations for Protein-Ligand Interaction Prediction☆36Aug 17, 2023Updated 2 years ago
- MS/MS prediction for peptides☆25Dec 18, 2020Updated 5 years ago
- ☆13Jul 2, 2025Updated last year
- ☆16Feb 21, 2025Updated last year
- Awesome Protein Representation Learning☆687Nov 16, 2024Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆107Jan 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆249May 22, 2023Updated 3 years ago
- ☆39Jun 9, 2025Updated last year
- Machine Learning and Neural Networks☆29May 22, 2023Updated 3 years ago
- Multiresolution Graph Transformers and Wavelet Positional Encoding for Learning Long-Range and Hierarchical Structures☆25Oct 27, 2023Updated 2 years ago
- MSAGPT☆39Nov 20, 2024Updated last year
- C++/CUDA library for SO(3) equivariant operations☆26Oct 21, 2025Updated 8 months ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- A PyTorch implementation of The ICLR 2019 paper "Invariant and Equivariant Graph Networks" by Haggai Maron, Heli Ben-Hamu, Nadav Shamir a…☆17Mar 7, 2022Updated 4 years ago
- ☆12Dec 15, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extract ligands from original PDB file☆10Nov 1, 2019Updated 6 years ago
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆102Mar 18, 2023Updated 3 years ago
- The Family of Diffusion Protein Language Models (DPLM)☆338Jul 25, 2025Updated 11 months ago
- a deep learning based drug target interaction prediction model☆11Nov 5, 2022Updated 3 years ago
- A multimodal dataset for google map restaurants.☆12Sep 28, 2022Updated 3 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- The official code respository for "Crystalformer: Infinitely Connected Attention for Periodic Structure Encoding" (ICLR 2024)☆28Mar 8, 2025Updated last year