☆15Jan 27, 2025Updated last year
Alternatives and similar repositories for alphafold3_for_rna
Users that are interested in alphafold3_for_rna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- parKVFinder: thread-level parallel KVFinder☆16May 9, 2025Updated last year
- ☆15Apr 9, 2026Updated 3 months ago
- ☆13Jan 25, 2026Updated 6 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆52Oct 31, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Histidine Protonation State Optimizer for setting up MD simulations based on semi-empirical QM resonance☆20Mar 6, 2026Updated 4 months ago
- RNA secondary structure prediction tool☆20Jul 3, 2026Updated 3 weeks ago
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆37Apr 21, 2026Updated 3 months ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- ☆26Dec 6, 2025Updated 7 months ago
- Contact-based protein structure prediction☆10Feb 12, 2019Updated 7 years ago
- ☆13Oct 9, 2024Updated last year
- AI for Chemical Spectra☆18Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- FlexPose, a framework for AI-based flexible modeling of protein-ligand binding pose.☆56Dec 27, 2023Updated 2 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Geometric deep learning of protein–DNA binding specificity☆80Mar 19, 2025Updated last year
- FoldBench is a low-homology benchmark spanning proteins, nucleic acids, ligands, and six major interaction types, enabling assessments th…☆142May 9, 2026Updated 2 months ago
- ☆27Feb 10, 2024Updated 2 years ago
- Official release of OneGenome-Rice models.☆25Jun 16, 2026Updated last month
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- ☆35Jun 29, 2024Updated 2 years ago
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Source code for the BUDE Alanine Scan web application.☆15May 27, 2025Updated last year
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆14Nov 19, 2019Updated 6 years ago
- Structure prediction of alternative protein conformations☆85Feb 24, 2025Updated last year
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated 2 years ago
- Simple python interface for the OpenProtein.AI REST API.☆17Jul 20, 2026Updated last week
- A cyclic peptide-protein complex dataset derived from AFDB.☆58Mar 17, 2026Updated 4 months ago
- Integrative protein sequence design with evolutionary multiobjective optimization.☆13Jul 16, 2024Updated 2 years ago
- ParetoDrug☆11Sep 3, 2024Updated last year
- ☆15Jul 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆30Aug 8, 2025Updated 11 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆83Aug 11, 2024Updated last year
- Code to perform scaffold hopping and virtual screening using WHALES descriptors.☆33Jan 12, 2021Updated 5 years ago
- Highly accurate and efficient deep learning paradigm for full-atom protein loop modeling with KarmaLoop☆15Jun 9, 2024Updated 2 years ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆55Jul 22, 2025Updated last year
- ☆42May 22, 2024Updated 2 years ago
- Client only USCIS API case tracker☆18Jan 23, 2026Updated 6 months ago