Alternatives and similar repositories for Prot2Text

Users that are interested in Prot2Text are comparing it to the libraries listed below

• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆98Updated last year
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆67Updated 3 weeks ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆129Updated last month
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• Yijia-Xiao / Protein-LLM-Survey
  Large Language Models in Protein: A Comprehensive Survey
  ☆106Updated 3 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆90Updated 6 months ago
• programmablebio / ptm-mamba
  ☆74Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆113Updated 4 months ago
• GENTEL-lab / OriGene
  OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery
  ☆112Updated last month
• zhengkangjie / ESM-AA
  ☆73Updated 5 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆120Updated last week
• BytedProtein / ByProt
  ☆196Updated 9 months ago
• A4Bio / ProteinInvBench
  The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics
  ☆186Updated 10 months ago
• DeepGraphLearning / PEER_Benchmark
  PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)
  ☆92Updated 2 years ago
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆82Updated last month
• QizhiPei / Awesome-Biomolecule-Language-Cross-Modeling
  Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…
  ☆215Updated 3 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆63Updated 5 months ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆66Updated 11 months ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆157Updated 9 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆34Updated 9 months ago
• jingbo02 / NovoBench
  [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"
  ☆13Updated 7 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆105Updated 4 months ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆114Updated last month
• THUDM / MSAGPT
  MSAGPT
  ☆34Updated 7 months ago
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆41Updated last year
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆98Updated last year
• KyGao / ABGNN
  PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"
  ☆52Updated last year
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆42Updated 10 months ago
• gersteinlab / GenAI4Drug
  [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
  ☆87Updated 7 months ago
• shuaizengMU / PEFT-SP
  ☆18Updated 8 months ago