dmis-lab / VAECox
ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data
☆17Updated 4 years ago
Alternatives and similar repositories for VAECox:
Users that are interested in VAECox are comparing it to the libraries listed below
- ☆64Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- ☆28Updated 3 years ago
- ☆52Updated 10 months ago
- Create cell sentences from sequencing data☆21Updated 6 months ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- ☆29Updated this week
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆15Updated this week
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 3 years ago
- ☆20Updated 3 years ago
- Knowledge-primed neural networks☆35Updated last year
- ☆53Updated 2 years ago
- Conditional out-of-distribution prediction☆56Updated 6 months ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Updated 2 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆87Updated 3 years ago
- Single cell typing based on cell ontology☆50Updated last year
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 4 years ago
- ☆98Updated 4 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆45Updated 4 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- ☆34Updated 2 years ago
- ACTIONet single-cell analysis framework☆38Updated 5 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆57Updated 2 years ago
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆113Updated 2 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 6 years ago