dmis-lab / VAECoxLinks
ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data
☆17Updated 5 years ago
Alternatives and similar repositories for VAECox
Users that are interested in VAECox are comparing it to the libraries listed below
Sorting:
- ☆66Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆38Updated 3 weeks ago
- Framework for Interpretable Neural Networks☆111Updated 7 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- P-NET, Biologically informed deep neural network for prostate cancer classification and discovery☆163Updated 4 years ago
- ☆101Updated last year
- ☆24Updated 9 months ago
- Multi-omics integration method using AE and GCN☆38Updated 2 years ago
- covolutional neural network based coexpression analysis☆79Updated 5 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Updated 2 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- CMap Notebooks for LINCS 2020 Workshop☆48Updated 4 years ago
- Deep-Learning framework for multi-omic and survival data integration☆86Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- ☆56Updated 2 years ago
- Archetypal Analysis network (AAnet)☆37Updated 9 months ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Updated 6 years ago
- LORIS: A LOgistic Regression-based Immunotherapy-response Score☆14Updated last year
- ☆57Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 3 months ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 4 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 4 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆121Updated 6 years ago
- Build foundation model on RNA or DNA data☆32Updated 3 weeks ago
- Similarity Network Fusion☆37Updated 10 years ago
- ☆30Updated 3 years ago