YosefLab / totalVI_reproducibilityLinks
☆16Updated 3 years ago
Alternatives and similar repositories for totalVI_reproducibility
Users that are interested in totalVI_reproducibility are comparing it to the libraries listed below
Sorting:
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- ☆16Updated 3 years ago
- Code and example of the D-SPIN framework☆24Updated last week
- Variant impact phenotyping using Perturb-seq☆10Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 3 years ago
- The software of Pamona, a partial manifold alignment algorithm.☆20Updated 4 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- cTPnet Package☆27Updated 3 years ago
- Code to reproduce analysis of Milo manuscript☆14Updated 3 years ago
- ☆60Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- ☆47Updated 5 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- ☆15Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Updated 4 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Updated 4 years ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24Updated 8 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago