imagej / pyimagej
Use ImageJ from Python
☆492Updated this week
Alternatives and similar repositories for pyimagej:
Users that are interested in pyimagej are comparing it to the libraries listed below
- TrackMate is your buddy for your everyday tracking.☆183Updated this week
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆219Updated last month
- Python control of micro-manager for customized data acquisition☆169Updated this week
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆585Updated 2 weeks ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆133Updated last month
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆211Updated 2 months ago
- Read and write life sciences file formats☆136Updated 6 months ago
- Image restoration for fluorescence microscopy☆297Updated 5 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆151Updated this week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆146Updated last week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆204Updated last year
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆132Updated this week
- Deep Learning Library for Single Cell Analysis☆442Updated 6 months ago
- A "batteries-included" distribution of ImageJ☆812Updated 2 weeks ago
- ilastik-shell, applets, and workflows to string them together.☆364Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆87Updated 5 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated last month
- StarDist - Object Detection with Star-convex Shapes☆1,000Updated 5 months ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆1,541Updated this week
- ImageJ2 programming examples☆184Updated 2 years ago
- Microscopy Image Stitching Tool☆137Updated 4 months ago
- Open source Python library for building bioimage analysis pipelines☆139Updated this week
- The ImageJ plugin to run deep-learning models☆92Updated last week
- Supplementary for my ImageJ Tutorial☆85Updated last month
- Segment Anything for Microscopy☆485Updated this week
- Read and write ImageJ ROI format.☆71Updated last month
- ImJoy: Deep Learning Made Easy!☆188Updated last year
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆194Updated last week
- ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging☆96Updated 6 years ago