imagej / pyimagej
Use ImageJ from Python
☆487Updated 2 weeks ago
Alternatives and similar repositories for pyimagej:
Users that are interested in pyimagej are comparing it to the libraries listed below
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆217Updated 4 months ago
- TrackMate is your buddy for your everyday tracking.☆179Updated 2 weeks ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆129Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆209Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆131Updated 2 months ago
- Deep Learning Library for Single Cell Analysis☆436Updated 5 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆63Updated last month
- ilastik-shell, applets, and workflows to string them together.☆353Updated this week
- Read and write life sciences file formats☆136Updated 5 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆142Updated last month
- A "batteries-included" distribution of ImageJ☆794Updated last week
- Segment Anything for Microscopy☆411Updated this week
- Python control of micro-manager for customized data acquisition☆167Updated 2 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆145Updated this week
- The ImageJ plugin to run deep-learning models☆90Updated this week
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆576Updated this week
- ImageJ2 programming examples☆184Updated last year
- ImJoy: Deep Learning Made Easy!☆188Updated last year
- StarDist - Object Detection with Star-convex Shapes☆977Updated 4 months ago
- An open-source application for biological image analysis☆949Updated this week
- Open source Python library for building bioimage analysis pipelines☆136Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆135Updated 2 months ago
- Cloud-based data annotation tools for biological images☆77Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆107Updated this week
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆1,481Updated this week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated last year
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆105Updated last week
- Read and write ImageJ ROI format.☆68Updated 5 months ago
- Fiji library to perform image segmentation based on the Weka learning schemes☆113Updated 4 months ago
- Image restoration for fluorescence microscopy☆294Updated 4 months ago