Use ImageJ from Python
☆535Oct 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for pyimagej
Users that are interested in pyimagej are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆244Aug 14, 2026Updated 2 months ago
- Connecting Java/ImgLib2 + Python/NumPy☆32Jun 17, 2026Updated 4 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 10 months ago
- Friendly base POM for all SciJava-based software☆28Updated this week
- ImageJ2 programming examples☆200Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ⚡ Supercharged Java access from Python ⚡☆55Updated this week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Oct 22, 2026Updated last week
- The ImageJ wiki☆30Oct 23, 2026Updated last week
- napari: a fast, interactive, multi-dimensional image viewer for python☆2,789Updated this week
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,418Jun 14, 2026Updated 4 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆263Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated 2 years ago
- A napari plugin for zarr backed OME-NGFF images☆56Oct 19, 2026Updated last week
- A "batteries-included" distribution of ImageJ☆1,031Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- StarDist - Object Detection with Star-convex Shapes☆1,286Feb 14, 2026Updated 8 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Oct 17, 2026Updated last week
- CLIJ is deprecated. Visit CLIJ2☆57Jun 12, 2021Updated 5 years ago
- A napari plugin for clustering objects according to their properties.☆91Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆178Updated this week
- Read and write TIFF files.☆671Oct 16, 2026Updated 2 weeks ago
- ☆20Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated 2 months ago
- Read and write life sciences file formats☆144Oct 3, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Model repository for bioimage.io☆17Aug 7, 2023Updated 3 years ago
- GPU-accelerated image processing for everyone☆60Jul 4, 2024Updated 2 years ago
- ☆45Oct 20, 2026Updated last week
- ☆120Updated this week
- TrackMate is your buddy for your everyday tracking.☆244Updated this week
- Use ImageJ functionality from napari☆35Updated this week
- sciview is a tool for visualization and interaction with ND image and mesh data☆75Sep 8, 2026Updated last month
- The python-microscopy environment - an open-source package for light microscopy☆99Oct 21, 2026Updated last week
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆137Apr 9, 2020Updated 6 years ago
- ☆22Aug 24, 2026Updated 2 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Aug 22, 2024Updated 2 years ago
- The ImageJ plugin to run deep-learning models☆99Oct 8, 2026Updated 3 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆40Updated this week
- Open scientific N-dimensional image processing☆1,416Aug 7, 2026Updated 2 months ago
- ☆23Mar 26, 2021Updated 5 years ago