Leica Image Format (LIF) file reader for Python
☆38Jul 7, 2025Updated 8 months ago
Alternatives and similar repositories for readlif
Users that are interested in readlif are comparing it to the libraries listed below
Sorting:
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 2 months ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated last month
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- ImageJ plugins for blind decomposition of fluorencence microscopy data☆10Mar 24, 2015Updated 10 years ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆25Updated this week
- ☆25May 16, 2023Updated 2 years ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- a lazy-loading, fancy-sliceable iterable☆18Jun 30, 2025Updated 8 months ago
- load an image from lif file as a numpy array☆10Jun 2, 2022Updated 3 years ago
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 5 months ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆28Nov 17, 2025Updated 4 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- Read and write life sciences file formats☆142Jun 12, 2025Updated 9 months ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 4 months ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- ☆19Updated this week
- Guide to python package development for scientists☆27Mar 9, 2026Updated last week
- A napari plugin for making animations☆95Feb 1, 2026Updated last month
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 5 months ago
- python multiple-tau correlation algorithm☆22Jun 27, 2024Updated last year
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- Segment Anything Model (SAM) native Qt UI☆214Aug 29, 2024Updated last year
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 2 weeks ago
- Cell tracking for longitudinal calcium imaging recordings.☆15Dec 11, 2025Updated 3 months ago
- Bayesian multi-object tracking☆331Jan 9, 2026Updated 2 months ago
- Model repository for bioimage.io☆17Aug 7, 2023Updated 2 years ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆18Mar 11, 2026Updated last week
- ☆14Jan 30, 2025Updated last year
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- Implementation of Contrastive Neural Processes in PyTorch☆11Dec 7, 2022Updated 3 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 2 months ago