Alternatives and similar repositories for readlif

Users that are interested in readlif are comparing it to the libraries listed below

• haesleinhuepf / devbio-napari
  ☆51Updated 5 months ago
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆70Updated this week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆46Updated last month
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆169Updated 5 months ago
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆26Updated last week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆38Updated 2 weeks ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆104Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated this week
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆58Updated 2 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆61Updated 2 weeks ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆52Updated 5 months ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated 10 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated 3 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆69Updated 3 weeks ago
• napari / napari-animation
  A napari plugin for making animations
  ☆90Updated 3 weeks ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆88Updated 2 weeks ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last week
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 9 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆59Updated last year
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• AnniekStok / napari-segmentation-correction
  A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
  ☆11Updated 2 weeks ago
• tlambert03 / microsim
  ☆41Updated this week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆81Updated last week
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆32Updated 4 years ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆104Updated 2 weeks ago
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated last year
• peng-lab / BaSiCPy
  ☆85Updated 7 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆72Updated 11 months ago