Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
☆16Mar 24, 2021Updated 5 years ago
Alternatives and similar repositories for ncrna-deep
Users that are interested in ncrna-deep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Dec 18, 2024Updated last year
- Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2026)☆55Jan 5, 2026Updated 3 months ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆34Apr 9, 2026Updated last week
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A script to make downloading of SRA/GEO data easier☆33Oct 6, 2023Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- ☆20Apr 16, 2024Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated 11 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 6 years ago
- ☆18Jun 22, 2024Updated last year
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- Yet another dynamic batch sampler for variable sequence data in PyTorch.☆13Dec 9, 2021Updated 4 years ago
- A PyTorch-Lightning based deep learning framework.☆11Dec 2, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆51Mar 20, 2024Updated 2 years ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆60Oct 8, 2024Updated last year
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 6 months ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. ggpmisc — Miscellaneous Extensions to 'ggplot2'. Homepage: https://docs.r4…☆15Mar 23, 2026Updated 3 weeks ago
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 2 years ago
- This is an official replacement for https://bitbucket.org/feeldead/gfold☆10Aug 30, 2020Updated 5 years ago
- ☆10May 18, 2022Updated 3 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆17May 6, 2025Updated 11 months ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆362May 27, 2025Updated 10 months ago
- ☆12Sep 21, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- A simple example of VAEs with KANs☆12May 17, 2024Updated last year
- Python playground for cell-type-specific biology☆12Apr 8, 2026Updated last week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Overview of the machine learning project and various sub-tasks.☆10Updated this week
- ☆13Feb 22, 2024Updated 2 years ago
- Code for paper "ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning"☆13Jan 24, 2022Updated 4 years ago