bioinformatics-sannio / ncrna-deepLinks
Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
☆16Updated 4 years ago
Alternatives and similar repositories for ncrna-deep
Users that are interested in ncrna-deep are comparing it to the libraries listed below
Sorting:
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- ☆37Updated 2 years ago
- ☆85Updated 2 years ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆65Updated 8 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆87Updated 3 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆46Updated 2 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Updated 5 months ago
- ☆17Updated 4 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- surrogate quantitative interpretability for deepnets☆24Updated 4 months ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated last week
- ☆28Updated 8 months ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆73Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- ☆12Updated last year
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆18Updated 3 years ago
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆50Updated 4 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆35Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆14Updated 8 months ago