Alternatives and similar repositories for folding_tools

Users that are interested in folding_tools are comparing it to the libraries listed below

• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆116Updated 2 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆62Updated last month
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆75Updated 4 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆54Updated 9 months ago
• Kuhlman-Lab / evopro
  ☆86Updated last month
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated 2 years ago
• yehlincho / BoltzDesign1
  ☆198Updated 2 weeks ago
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆164Updated last week
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆112Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆42Updated 3 weeks ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆66Updated 3 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated last week
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆44Updated last month
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆91Updated 2 months ago
• ELELAB / RosettaDDGPrediction
  ☆74Updated 6 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆98Updated last week
• bene837 / af2seq
  ☆44Updated 11 months ago
• bunzela / AIzymes
  ☆52Updated last month
• levinthal / Pallatom
  ☆109Updated 2 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆70Updated 3 weeks ago
• huhlim / alphafold-multistate
  ☆42Updated last year
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 9 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated last year
• jproney / AF2Rank
  ☆111Updated 2 years ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆93Updated 8 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆64Updated 3 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 9 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆64Updated last month